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Remove reduce step from emapa pipeline #132

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Remove reduce step from emapa pipeline #132

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2 changes: 1 addition & 1 deletion src/ontology/Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ prepare_release: all
# by default we use Elk to perform a reason-relax-reduce chain
# after that we annotate the ontology with the release versionInfo
$(ONT).owl: $(SRC)
$(ROBOT) reason -i $< -r ELK relax reduce -r ELK annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT).owl -o $@
$(ROBOT) reason -i $< -r ELK relax annotate -V $(BASE)/releases/`date +%Y-%m-%d`/$(ONT).owl -o $@
$(ONT).obo: $(ONT).owl
$(ROBOT) convert -i $< -f obo -o $(ONT).obo.tmp && grep -v ^owl-axioms $(ONT).obo.tmp > $@

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2 changes: 1 addition & 1 deletion src/ontology/run.sh
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Expand Up @@ -9,4 +9,4 @@
# we therefore map the whole repo (../..) to a docker volume.
#
# See README-editors.md for more details.
docker run -v $PWD/../../:/work -w /work/src/ontology --rm -ti obolibrary/osklite "$@"
docker run -v $PWD/../../:/work -w /work/src/ontology --rm -ti obolibrary/odklite "$@"