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Add HRA capillary NTR template (32 new capillary terms) #3714

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e1f11ca
Add HRA capillary NTR template (32 new capillary terms)
zhengj2007 May 25, 2026
3752b9b
Merge remote-tracking branch 'origin/master' into add-hra-capillary-ntr
zhengj2007 Jun 26, 2026
0684f9f
Update capillary template labels, merges, and IDs
zhengj2007 Jun 27, 2026
0cf42ab
Remove empty hra-capillary-groups template
zhengj2007 Jun 27, 2026
3179c04
Register hra-capillary template with ODK
zhengj2007 Jul 5, 2026
3ff4697
Fix uberon-odk.yaml YAML formatting
zhengj2007 Jul 5, 2026
5a873b1
Move report artifacts out of src/templates to bulk_ntr_workflow/outputs/
dosumis Jul 6, 2026
24fbb93
Complete ODK wiring for hra_capillary component
dosumis Jul 9, 2026
a9a57dd
Regenerate ODK Makefile to wire hra_capillary component (make update_…
dosumis Jul 9, 2026
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2 changes: 2 additions & 0 deletions bulk_ntr_workflow/outputs/hra-capillary-reports/candidates.tsv
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label as_iri uberon_id note
villous capillary UBERON:8600041 confirmed_match (confidence: high)
30 changes: 30 additions & 0 deletions bulk_ntr_workflow/outputs/hra-capillary-reports/errors.tsv
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label as_iri issue_type parent_id parent_label detail
alveolar capillary https://purl.org/ccf/ASCTB-TEMP_alveolar-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_pre-alveolar-capillary pre-alveolar capillary Parent not yet in UBERON; subagent should search OLS4 for correct parent
alveolar mucosa capillary https://purl.org/ccf/ASCTB-TEMP_alveolar-mucosa-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_alveolar-mucosa-arteriole alveolar mucosa arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
anterior lingual gland capillary https://purl.org/ccf/ASCTB-TEMP_anterior-lingual-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_anterior-lingual-gland-arteriole anterior lingual gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
branch of superficial white pulp capillary of spleen https://purl.org/ccf/ASCTB-TEMP_branch-of-superficial-white-pulp-capillary-of-spleen asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_superficial-white-pulp-capillary-of-spleen superficial white pulp capillary of spleen Parent not yet in UBERON; subagent should search OLS4 for correct parent
bronchial capillary https://purl.org/ccf/ASCTB-TEMP_bronchial-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_bronchial-arteriole bronchial arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
buccal mucosa capillary https://purl.org/ccf/ASCTB-TEMP_buccal-mucosa-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_buccal-mucosa-arteriole buccal mucosa arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
deep parotid gland capillary https://purl.org/ccf/ASCTB-TEMP_deep-parotid-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_deep-parotid-gland-arteriole deep parotid gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
inferior labial gland capillary https://purl.org/ccf/ASCTB-TEMP_inferior-labial-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_inferior-labial-gland-arteriole inferior labial gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
internal primary capillary plexus of median eminence https://purl.org/ccf/ASCTB-TEMP_internal-primary-capillary-plexus-of-median-eminence asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_external-primary-capillary-plexus-of-median-eminence external primary capillary plexus of median eminence Parent not yet in UBERON; subagent should search OLS4 for correct parent
lobular capillary of pancreas https://purl.org/ccf/ASCTB-TEMP_lobular-capillary-of-pancreas asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas Parent not yet in UBERON; subagent should search OLS4 for correct parent
mandibular pulp capillary https://purl.org/ccf/ASCTB-TEMP_mandibular-pulp-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_mandibular-pulp-arteriole mandibular pulp arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
maxillary pulp capillary https://purl.org/ccf/ASCTB-TEMP_maxillary-pulp-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_maxillary-pulp-arteriole maxillary pulp arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
palatine gland capillary https://purl.org/ccf/ASCTB-TEMP_palatine-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_palatine-gland-arteriole palatine gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
palatine tonsil capillary https://purl.org/ccf/ASCTB-TEMP_palatine-tonsil-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_palatine-tonsil-arteriole palatine tonsil arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
periductal capillary of accessory pancreatic duct https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-accessory-pancreatic-duct asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-accessory-pancreatic-duct periductal arteriole of accessory pancreatic duct Parent not yet in UBERON; subagent should search OLS4 for correct parent
periductal capillary of intercalated duct of pancreas https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-intercalated-duct-of-pancreas asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas Parent not yet in UBERON; subagent should search OLS4 for correct parent
periductal capillary of interlobular duct of pancreas https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-interlobular-duct-of-pancreas asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-interlobular-duct-of-pancreas periductal arteriole of interlobular duct of pancreas Parent not yet in UBERON; subagent should search OLS4 for correct parent
periductal capillary of intralobular duct of panceas https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-intralobular-duct-of-panceas asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas Parent not yet in UBERON; subagent should search OLS4 for correct parent
periductal capillary of main pancreatic duct https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-main-pancreatic-duct asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-main-pancreatic-duct periductal arteriole of main pancreatic duct Parent not yet in UBERON; subagent should search OLS4 for correct parent
post-sheath open capillary of spleen https://purl.org/ccf/ASCTB-TEMP_post-sheath-open-capillary-of-spleen asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen sheathed capillary of spleen, Sheathed capillary of spleen Parent not yet in UBERON; subagent should search OLS4 for correct parent
secondary capillary plexus of anterior pituitary gland https://purl.org/ccf/ASCTB-TEMP_secondary-capillary-plexus-of-anterior-pituitary-gland fma_parent FMA:0327575 Hypophysial long portal vein Subagent should resolve FMA→UBERON via OLS4
sheathed capillary of spleen https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen asctb_temp_parent UBERON:0001250, UBERON:0005353, https://purl.org/ccf/ASCTB-TEMP_non-penicillar-arteriole-of-spleen red pulp of spleen, spleen perifollicular zone, non-penicillar arteriole of spleen Parent not yet in UBERON; subagent should search OLS4 for correct parent
sublingual gland capillary https://purl.org/ccf/ASCTB-TEMP_sublingual-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_sublingual-gland-arteriole sublingual gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
submandibular gland capillary https://purl.org/ccf/ASCTB-TEMP_submandibular-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_submandibular-gland-arteriole submandibular gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
superficial white pulp capillary of spleen https://purl.org/ccf/ASCTB-TEMP_superficial-white-pulp-capillary-of-spleen asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen sheathed capillary of spleen, Sheathed capillary of spleen Parent not yet in UBERON; subagent should search OLS4 for correct parent
superior labial gland capillary https://purl.org/ccf/ASCTB-TEMP_superior-labial-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_superior-labial-gland-arteriole superior labial gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
superior parotid gland capillary https://purl.org/ccf/ASCTB-TEMP_superior-parotid-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_superior-parotid-gland-arteriole superior parotid gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
tongue capillary https://purl.org/ccf/ASCTB-TEMP_tongue-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_tongue-arteriole tongue arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
Weber's gland capillary https://purl.org/ccf/ASCTB-TEMP_weber-s-gland-capillary asctb_temp_parent https://purl.org/ccf/ASCTB-TEMP_weber-s-gland-arteriole Weber's gland arteriole Parent not yet in UBERON; subagent should search OLS4 for correct parent
36 changes: 36 additions & 0 deletions bulk_ntr_workflow/outputs/hra-capillary-reports/input.tsv
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table as_iri label uberon_id parent_id parent_label references term_type
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_alveolar-capillary alveolar capillary https://purl.org/ccf/ASCTB-TEMP_pre-alveolar-capillary pre-alveolar capillary https://doi.org/10.1152/japplphysiol.01177.2009 leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_alveolar-mucosa-capillary alveolar mucosa capillary https://purl.org/ccf/ASCTB-TEMP_alveolar-mucosa-arteriole alveolar mucosa arteriole https://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_anterior-lingual-gland-capillary anterior lingual gland capillary https://purl.org/ccf/ASCTB-TEMP_anterior-lingual-gland-arteriole anterior lingual gland arteriole https://en.wikipedia.org/wiki/Lingual_artery leaf
spleen https://purl.org/ccf/ASCTB-TEMP_arterial-capillary Arterial Capillary UBERON:0001250 red pulp of spleen https://doi.org/ 10.1182/ bloodadvances.2017015073, https://doi.org/10.1007/s00418-007-0320-8 leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_branch-of-superficial-white-pulp-capillary-of-spleen branch of superficial white pulp capillary of spleen https://purl.org/ccf/ASCTB-TEMP_superficial-white-pulp-capillary-of-spleen superficial white pulp capillary of spleen leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_bronchial-capillary bronchial capillary https://purl.org/ccf/ASCTB-TEMP_bronchial-arteriole bronchial arteriole https://en.wikipedia.org/wiki/Bronchial_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_buccal-mucosa-capillary buccal mucosa capillary https://purl.org/ccf/ASCTB-TEMP_buccal-mucosa-arteriole buccal mucosa arteriole https://en.wikipedia.org/wiki/Buccal_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_capillary-plexus-of-posterior-pituitary-gland capillary plexus of posterior pituitary gland UBERON:0035492 inferior hypophysial artery https://basicmedicalkey.com/endocrine-system-3/ leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_deep-parotid-gland-capillary deep parotid gland capillary https://purl.org/ccf/ASCTB-TEMP_deep-parotid-gland-arteriole deep parotid gland arteriole https://en.wikipedia.org/wiki/Maxillary_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_external-primary-capillary-plexus-of-median-eminence external primary capillary plexus of median eminence UBERON:0035404 superior hypophysial artery https://basicmedicalkey.com/endocrine-system-3/ leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_inferior-labial-gland-capillary inferior labial gland capillary https://purl.org/ccf/ASCTB-TEMP_inferior-labial-gland-arteriole inferior labial gland arteriole https://en.wikipedia.org/wiki/Inferior_labial_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_internal-primary-capillary-plexus-of-median-eminence internal primary capillary plexus of median eminence https://purl.org/ccf/ASCTB-TEMP_external-primary-capillary-plexus-of-median-eminence external primary capillary plexus of median eminence https://basicmedicalkey.com/endocrine-system-3/ leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_lobular-capillary-of-pancreas lobular capillary of pancreas https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_mandibular-pulp-capillary mandibular pulp capillary https://purl.org/ccf/ASCTB-TEMP_mandibular-pulp-arteriole mandibular pulp arteriole https://en.wikipedia.org/wiki/Inferior_alveolar_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_maxillary-pulp-capillary maxillary pulp capillary https://purl.org/ccf/ASCTB-TEMP_maxillary-pulp-arteriole maxillary pulp arteriole https://en.wikipedia.org/wiki/Posterior_superior_alveolar_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_palatine-gland-capillary palatine gland capillary https://purl.org/ccf/ASCTB-TEMP_palatine-gland-arteriole palatine gland arteriole https://en.wikipedia.org/wiki/Greater_palatine_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_palatine-tonsil-capillary palatine tonsil capillary https://purl.org/ccf/ASCTB-TEMP_palatine-tonsil-arteriole palatine tonsil arteriole https://en.wikipedia.org/wiki/Ascending_palatine_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-accessory-pancreatic-duct periductal capillary of accessory pancreatic duct https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-accessory-pancreatic-duct periductal arteriole of accessory pancreatic duct https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-intercalated-duct-of-pancreas periductal capillary of intercalated duct of pancreas https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-interlobular-duct-of-pancreas periductal capillary of interlobular duct of pancreas https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-interlobular-duct-of-pancreas periductal arteriole of interlobular duct of pancreas https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-intralobular-duct-of-panceas periductal capillary of intralobular duct of panceas https://purl.org/ccf/ASCTB-TEMP_intralobular-arteriole-of-pancreas intralobular arteriole of pancreas https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_periductal-capillary-of-main-pancreatic-duct periductal capillary of main pancreatic duct https://purl.org/ccf/ASCTB-TEMP_periductal-arteriole-of-main-pancreatic-duct periductal arteriole of main pancreatic duct https://www.flandershealth.us/chronic-pancreatitis/microcirculation-of-the-pancreas.html leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_post-alveolar-capillary post-alveolar capillary UBERON:8600061 intra-acinar venule https://doi.org/10.1152/japplphysiol.01177.2009 leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_post-sheath-open-capillary-of-spleen post-sheath open capillary of spleen https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen sheathed capillary of spleen, Sheathed capillary of spleen leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_pre-alveolar-capillary pre-alveolar capillary UBERON:8600094 intra-acinar arteriole https://doi.org/10.1152/japplphysiol.01177.2009 leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_secondary-capillary-plexus-of-anterior-pituitary-gland secondary capillary plexus of anterior pituitary gland http://purl.org/sig/ont/fma/fma0327575 Hypophysial long portal vein https://basicmedicalkey.com/endocrine-system-3/ leaf
spleen https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen sheathed capillary of spleen UBERON:0001250, UBERON:0005353, https://purl.org/ccf/ASCTB-TEMP_non-penicillar-arteriole-of-spleen red pulp of spleen, spleen perifollicular zone, non-penicillar arteriole of spleen https://doi.org/10.1007/s00418-013-1172-z, https://doi.org/10.1111/j.1365-2559.1985.tb02841.x, https://doi.org/10.1111/j.1365-2559.1986.tb02482.x, https://doi.org/10.1111/imm.12469, https://doi.org/10.1186/s13059-019-1906-x, https://doi.org/10.1017/CBO9780511545979, https://doi.org/10.1182/bloodadvances.2017015073, https://doi.org/10.1007/s00418-020-01924-3, https://doi.org/10.1371/journal.pone.0191019 leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_sublingual-gland-capillary sublingual gland capillary https://purl.org/ccf/ASCTB-TEMP_sublingual-gland-arteriole sublingual gland arteriole https://en.wikipedia.org/wiki/Lingual_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_submandibular-gland-capillary submandibular gland capillary https://purl.org/ccf/ASCTB-TEMP_submandibular-gland-arteriole submandibular gland arteriole https://en.wikipedia.org/wiki/Glandular_branches_of_facial_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_superficial-white-pulp-capillary-of-spleen superficial white pulp capillary of spleen https://purl.org/ccf/ASCTB-TEMP_sheathed-capillary-of-spleen sheathed capillary of spleen, Sheathed capillary of spleen leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_superior-labial-gland-capillary superior labial gland capillary https://purl.org/ccf/ASCTB-TEMP_superior-labial-gland-arteriole superior labial gland arteriole https://en.wikipedia.org/wiki/Superior_labial_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_superior-parotid-gland-capillary superior parotid gland capillary https://purl.org/ccf/ASCTB-TEMP_superior-parotid-gland-arteriole superior parotid gland arteriole https://en.wikipedia.org/wiki/Superficial_temporal_artery leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_tongue-capillary tongue capillary https://purl.org/ccf/ASCTB-TEMP_tongue-arteriole tongue arteriole https://en.wikipedia.org/wiki/Lingual_artery leaf
placenta https://purl.org/ccf/ASCTB-TEMP_villous-capillary villous capillary UBERON:8600030 chorionic terminal villus leaf
blood-vasculature https://purl.org/ccf/ASCTB-TEMP_weber-s-gland-capillary Weber's gland capillary https://purl.org/ccf/ASCTB-TEMP_weber-s-gland-arteriole Weber's gland arteriole PMID:32119400 leaf
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