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Replace chebi slim URL #76

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Merged
matentzn merged 2 commits into from
Jan 19, 2026
Merged

Replace chebi slim URL #76

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Replace https://raw.githubusercontent.com/obophenotype/chebi_obo_slim…
aleixpuigb Jan 19, 2026
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aleixpuigb Jan 19, 2026
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2 changes: 1 addition & 1 deletion docs/odk-workflows/RepositoryFileStructure.md
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Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@ These are the current imports in ZP
| caro | http://purl.obolibrary.org/obo/caro.owl | slme |
| go | http://purl.obolibrary.org/obo/go.owl | slme |
| ro | http://purl.obolibrary.org/obo/ro.owl | slme |
| chebi | https://raw.githubusercontent.com/obophenotype/chebi_obo_slim/main/chebi_slim.owl | slme |
| chebi | http://purl.obolibrary.org/obo/upheno/chebi_slim.owl | slme |
| bspo | http://purl.obolibrary.org/obo/bspo.owl | slme |
| pato | http://purl.obolibrary.org/obo/pato.owl | slme |
| mpath | http://purl.obolibrary.org/obo/mpath.owl | slme |
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4 changes: 2 additions & 2 deletions src/ontology/Makefile
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Expand Up @@ -10,7 +10,7 @@
# More information: https://github.com/INCATools/ontology-development-kit/

# Fingerprint of the configuration file when this Makefile was last generated
CONFIG_HASH= 99af76b7f2328471bf0bb6570a80b7c7424e15a85ba9754da8106283b744a2b2
CONFIG_HASH= 27bcfbf22854c6eb318992d90aaa2f698967c12545e5df8c945d2b57796aff60


# ----------------------------------------
Expand Down Expand Up @@ -554,7 +554,7 @@ mirror-ro: | $(TMPDIR)
.PHONY: mirror-chebi
.PRECIOUS: $(MIRRORDIR)/chebi.owl
mirror-chebi: | $(TMPDIR)
$(ROBOT) remove -I https://raw.githubusercontent.com/obophenotype/chebi_obo_slim/main/chebi_slim.owl --base-iri http://purl.obolibrary.org/obo/CHEBI --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl
$(ROBOT) remove -I http://purl.obolibrary.org/obo/upheno/chebi_slim.owl --base-iri http://purl.obolibrary.org/obo/CHEBI --axioms external --preserve-structure false --trim false -o $(TMPDIR)/$@.owl


## ONTOLOGY: bspo
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2 changes: 1 addition & 1 deletion src/ontology/zp-odk.yaml
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Expand Up @@ -56,7 +56,7 @@ import_group:
use_base: TRUE
- id: chebi
make_base: TRUE
mirror_from: https://raw.githubusercontent.com/obophenotype/chebi_obo_slim/main/chebi_slim.owl
mirror_from: http://purl.obolibrary.org/obo/upheno/chebi_slim.owl
- id: bspo
use_base: TRUE
- id: pato
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