Skip to content
@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned Loading

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 5

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 239 repositories
  • mutect2Consensus Public

    The Mutect2Consensus workflow will process umiConsensus outputs for the tumour data through mutect2 in tumour only mode to call variants then use information from the matched normal to identify likely germline variants.

    oicr-gsi/mutect2Consensus’s past year of commit activity
    WDL 0 0 0 2 Updated Mar 12, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 5 6 6 Updated Mar 12, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    oicr-gsi/pipeline-timings’s past year of commit activity
    0 0 0 0 Updated Mar 12, 2025
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    0 0 0 1 Updated Mar 12, 2025
  • xenoclassify-workflow Public

    workflow to classify short-read sequencing data generated from xenograft samples

    oicr-gsi/xenoclassify-workflow’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 11, 2025
  • wgsMetrics Public

    Wrapper for picard WGSMetrics

    oicr-gsi/wgsMetrics’s past year of commit activity
    WDL 0 GPL-3.0 1 0 2 Updated Mar 11, 2025
  • virusbreakend Public

    OICR Genomics WDL for VIRUSBreakend

    oicr-gsi/virusbreakend’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 11, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 2 Updated Mar 11, 2025
  • umiConsensus Public

    Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

    oicr-gsi/umiConsensus’s past year of commit activity
    WDL 1 0 0 1 Updated Mar 11, 2025
  • umiCollapse Public

    umiCollapse workflow, generating umi deduplicated bam file and stats

    oicr-gsi/umiCollapse’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 11, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…