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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 195 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    64 57

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 40 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 19 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 14 6

Repositories

Showing 10 of 176 repositories
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp’s past year of commit activity
    Shell 8 2 1 0 Updated May 8, 2025
  • BioinfoUgrp_UnixGoodies_Images Public

    Singularity images with cool Unix tools to be exported as modules in HPC clusters

    oist/BioinfoUgrp_UnixGoodies_Images’s past year of commit activity
    Dockerfile 3 0 3 0 Updated May 8, 2025
  • plessy_nf_GenomicBreaks Public

    Draft Nextflow pipeline to convert alignment files and extract basic stats.

    oist/plessy_nf_GenomicBreaks’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 8, 2025
  • NEXTNetR Public
    oist/NEXTNetR’s past year of commit activity
    C++ 0 LGPL-3.0 0 0 0 Updated May 8, 2025
  • NEXTNet Public

    C++ implementation of the NEXT-Net algorithm for efficient simulation of epidemics on complex networks

    oist/NEXTNet’s past year of commit activity
    C++ 0 LGPL-3.0 0 0 0 Updated May 8, 2025
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated May 7, 2025
  • gene-context Public
    oist/gene-context’s past year of commit activity
    Jupyter Notebook 1 0 0 1 Updated May 7, 2025
  • nf-core_configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    oist/nf-core_configs’s past year of commit activity
    Nextflow 0 MIT 308 0 1 Updated May 4, 2025
  • LuscombeU_Oikopleura_genome_assemblies Public

    List of github links for Oikopleura genome assemblies

    oist/LuscombeU_Oikopleura_genome_assemblies’s past year of commit activity
    1 0 0 0 Updated May 2, 2025
  • smartphone-robot-firmware Public

    Firmware for rp2040 used by smartphone-robots

    oist/smartphone-robot-firmware’s past year of commit activity
    C 0 0 0 0 Updated May 2, 2025
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