work-in-progress PR, DA

.github/actions/show-workflow-trigger/README.md

@@ -0,0 +1,3 @@
+# Composite action to show the trigger of a workflow
+
+If possible, prints also the user that triggered it

.github/actions/show-workflow-trigger/action.yml

@@ -0,0 +1,27 @@
+name: 'Show workflow trigger'
+description: 'Prints what triggered this workflow'
+
+runs:
+  using: "composite"
+  steps:
+    - name: Print trigger info
+      uses: actions/github-script@v7
+      with:
+        script: |
+          const eventName = context.eventName;
+          const actor = context.actor || 'unknown';  // Default to 'unknown' if actor is not defined
+          let eventAction = 'N/A';
+
+          // Determine the event action based on the event type
+          if (eventName === 'pull_request') {
+            eventAction = context.payload.action || 'N/A';
+          } else if (eventName === 'pull_request_review') {
+            eventAction = context.payload.review.state || 'N/A';
+          } else if (eventName === 'workflow_dispatch') {
+            eventAction = 'manual trigger';
+          } else if (eventName === 'schedule') {
+            eventAction = 'scheduled trigger';
+          }
+          console.log(`The job was triggered by a ${eventName} event.`);
+          console.log(`  - Event action: ${eventAction}`);
+          console.log(`  - Triggered by: ${actor}`);

.github/actions/test-all-eamxx/README.md

@@ -0,0 +1,33 @@
+# Composite action to call test-all-eamxx inside a workflow
+
+This action is meant to be used inside a workflow. E.g.,
+
+```yaml
+jobs:
+  my-testing:
+    steps:
+      ...
+      - name: run-test-all-eamxx
+        uses: ./.github/actions/test-all-eamxx
+        with:
+          build_type: <build-type>
+          machine: <machine>
+          run_type: <run-type>
+```
+
+The input run_type is the only input that this action has to explicitly handle.
+As such, this action checks that its value is one of the following.
+
+- nightly: runs tests and then submit to cdash
+- at-run: runs tests without submitting to cdash
+- bless: runs tests and copy output files to baselines folder
+
+As for build_type and machine, we do not prescribe a list of
+valid values, as that will be handled by components/eamxx/scripts/test-all-eamxx.
+If their values are not supported, it is up to test-all-scram to handle the error.
+As a guideline, however, you may have to ensure that the following exist:
+
+- the file components/eamxx/cmake/machine-files/${machine}.cmake
+- the entry ${machine} in the MACHINE_METADATA dict in components/eamxx/scripts/machine_specs.py
+
+ Questions? Contact Luca Bertagna [[email protected]](mailto:[email protected])

.github/actions/test-all-eamxx/action.yml

@@ -0,0 +1,115 @@
+name: EAMxx standalone testing
+description: |
+  Run EAMxx standalone testing with required configuration inputs.
+  More precisely, it launches test-all-eamxx with the proper flags.
+  See components/eamxx/scripts/test-all-eamxx for more details.
+  The configuration inputs are:
+    - build_type: the type of build to pass to test-all-eamxx.
+    - machine: the name of the machine to pass to test-all-eamxx
+    - generate: whether to generate baselines
+    - submit: whether to submit to cdash (unused if generate is 'true')
+
+inputs:
+  build_type:
+    description: 'Build type to run'
+    required: true
+  machine:
+    description: 'Machine name for test-all-eamxx'
+    required: true
+  generate:
+    description: 'Generate baselines instead of running tests'
+    required: true
+    default: 'false'
+    valid_values:
+      - 'true'
+      - 'false'
+  submit:
+    description: 'Submit results to cdash (unused if generate=true)'
+    required: true
+    default: 'false'
+    valid_values:
+      - 'true'
+      - 'false'
+  ekat:
+    description: 'Whether to enable tests for EKAT as well'
+    required: true
+    default: 'false'
+    valid_values:
+      - 'true'
+      - 'false'
+  cmake-configs:
+    description: 'Semicolon-separated list of key=value pairs for CMake to pass to test-all-eamxx'
+    required: false
+    default: ''
+
+runs:
+  using: "composite"
+  steps:
+    - name: Set CA certificates env var
+      run: |
+        # Ensure the operating system is Linux
+        if [ "$(uname)" != "Linux" ]; then
+          echo "This action only supports Linux."
+          exit 1
+        fi
+        # Set env var to be used in upload-artifacts phase
+        if [ -f /etc/debian_version ]; then
+          echo "NODE_EXTRA_CA_CERTS=/etc/ssl/certs/ca-certificates.crt" >> $GITHUB_ENV
+        elif [ -f /etc/redhat-release ] || [ -f /etc/centos-release ] || [ -f /etc/fedora-release ]; then
+          echo "NODE_EXTRA_CA_CERTS=/etc/pki/tls/certs/ca-bundle.crt" >> $GITHUB_ENV
+        else
+          echo "Unsupported Linux distribution"
+          exit 1
+        fi
+      shell: sh
+    - name: Check repo presence
+      run: |
+        if [ ! -d ".git" ]; then
+          echo "Repository is not checked out. Please ensure the repository is checked out before running this action."
+          exit 1
+        fi
+      shell: sh
+    - name: Print build specs
+      run: |
+        echo "Testing EAMxx standalone, for the following configuration:"
+        echo "  build type   : ${{ inputs.build_type }}"
+        echo "  machine      : ${{ inputs.machine }}"
+        echo "  generate     : ${{ inputs.generate }}"
+        echo "  submit       : ${{ inputs.submit }}"
+        echo "  cmake-configs: ${{ inputs.cmake-configs }}"
+      shell: sh
+    - name: Run test-all-eamxx
+      working-directory: components/eamxx
+      run: |
+        cmd="./scripts/test-all-eamxx -m ${{ inputs.machine }} -t ${{inputs.build_type}} --baseline-dir AUTO -c EKAT_DISABLE_TPL_WARNINGS=ON"
+        if [ "${{ inputs.generate }}" = "true" ]; then
+          cmd+=" -g"
+        elif [ "${{ inputs.submit }}" = "true" ]; then
+          cmd+=" -s"
+        fi
+
+        if [ "${{ inputs.ekat }}" = "true" ]; then
+         cmd+=" -c EKAT_ENABLE_TESTS=ON"
+        fi
+
+        # If cmake-configs is non-empty, add tokens to test-all-eamxx via "-c key=val"
+        IFS=';' read -ra configs <<< "${{ inputs.cmake-configs }}"
+        for config in "${configs[@]}"; do
+          cmd+=" -c $config"
+        done
+
+        # Print the full command, then run it
+        echo "test-all-eamxx call: $cmd"
+        $cmd
+      shell: sh
+    - name: Upload ctest logs
+      if: always()
+      uses: actions/upload-artifact@v4
+      with:
+        name: log-files-${{ inputs.build_type }}-${{ inputs.machine }}
+        path: |
+          components/eamxx/ctest-build/*/Testing/Temporary/Last*.log
+          components/eamxx/ctest-build/*/ctest_resource_file.json
+          components/eamxx/ctest-build/*/CMakeCache.txt
+      env:
+        NODE_EXTRA_CA_CERTS: ${{ env.NODE_EXTRA_CA_CERTS }}

.github/dependabot.yml

@@ -7,9 +7,6 @@ updates:
     schedule:
       interval: "weekly"
     assignees:
-      - "rljacob"
+      - "bartgol"
     reviewers:
       - "mahf708"
-      - "bartgol"
-    labels:
-      - "AT: Integrate Without Testing"

.github/workflows/e3sm-gh-ci-cime-tests.yml

@@ -2,7 +2,9 @@ name: gh
 
 on:
   pull_request:
-    branches: [ master ]
+    branches: 
+      - master
+      - maint-3.0
     paths:
       # first, yes to these
       - '.github/workflows/e3sm-gh-ci-cime-tests.yml'
@@ -40,7 +42,7 @@ jobs:
           - SMS_D_Ln5_P4.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.ghci-oci_gnu
           - ERS_Ld5_P4.ne4pg2_oQU480.F2010-SCREAMv1-MPASSI.ghci-oci_gnu.eamxx-prod
     container: 
-      image: ghcr.io/e3sm-project/containers-ghci:ghci-0.2.0
+      image: ghcr.io/e3sm-project/containers-ghci:ghci-0.2.1
 
     steps:
       - 

.github/workflows/e3sm-gh-ci-w-cime-tests.yml

@@ -2,7 +2,9 @@ name: gh-w
 
 on:
   pull_request:
-    branches: [ master ]
+    branches: 
+      - master
+      - maint-3.0
     paths-ignore:
       - 'mkdocs.yaml'
       - 'docs/**'
@@ -27,7 +29,7 @@ jobs:
           - SMS_D_Ld1_P8.ne4pg2_oQU480.WCYCL2010NS.ghci-oci_gnu
           - ERS_Ld3_P8.ne4pg2_oQU480.WCYCL2010NS.ghci-oci_gnu.allactive-wcprod_1850
     container: 
-      image: ghcr.io/e3sm-project/containers-ghci:ghci-0.2.0
+      image: ghcr.io/e3sm-project/containers-ghci:ghci-0.2.1
 
     steps:
       - 

.github/workflows/e3sm-gh-md-linter.yml

@@ -7,8 +7,6 @@ on:
     branches: ["master"]
     paths:
         - '**/*.md'
-        # for now let's not lint files in eamxx
-        - '!components/eamxx/**/*.md'
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.event_name }}-${{ github.event.pull_request.number || github.run_id }}
@@ -22,12 +20,12 @@ jobs:
     - uses: actions/checkout@v4
       with:
         fetch-depth: 0
-    - uses: tj-actions/changed-files@v45
+    - uses: tj-actions/changed-files@v46
       id: changed-files
       with:
         files: '**/*.md'
         separator: ","
-    - uses: DavidAnson/markdownlint-cli2-action@v17
+    - uses: DavidAnson/markdownlint-cli2-action@v20
       if: steps.changed-files.outputs.any_changed == 'true'
       with:
         config: 'docs/.markdownlint.json'