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Clarify the use of "Plane" elements in artifical example data #4

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sbesson merged 2 commits into from
Jul 1, 2025
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Clarify the use of "Plane" elements in artifical example data #4

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d545853
Clarify the use of "Plane" elements in artifical example data
melissalinkert Mar 18, 2025
eb12e21
Fix sub-resolutions reference
melissalinkert Mar 18, 2025
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10 changes: 8 additions & 2 deletions ome-tiff/data.rst
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Expand Up @@ -112,6 +112,9 @@ section of the OME Data Model, derived from the public

See `Neumann B et al. (2010). Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes. Nature 464(7289):721 <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3108885/>`__.


.. _sub-resolutions:

Sub-resolutions
^^^^^^^^^^^^^^^

Expand Down Expand Up @@ -162,8 +165,11 @@ Artificial datasets
^^^^^^^^^^^

All datasets in the following table are single OME-TIFF files generated using
Bio-Formats ``loci.formats.tools.MakeTestOmeTiff``. Each plane is labeled
according to its dimensional position for easy testing.
Bio-Formats ``loci.formats.tools.MakeTestOmeTiff``. Dimensional information
is included in the pixel data for each plane, for easier testing of plane indexing
and dimension order. Note that no OME-XML `Plane` elements are populated in these
examples; see :ref:`modulo-datasets` and :ref:`sub-resolutions` for examples with
`Plane` elements.

.. list-table::
:header-rows: 1
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