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scaling without specified view is broken

Status: Open.

#282 In open2c/pairtools;

· Phlya opened on Feb 2, 2026

pairtools parse2 returns <class 'NotImplementedType'> when using --add-columns seq

Status: Open.

#281 In open2c/pairtools;

· bskubi opened on Jan 23, 2026

Phase not updating chromosomes names in the header

Status: Open.

#280 In open2c/pairtools;

· Phlya opened on Nov 3, 2025

bug in "select" when filtering and --remove-columns at the same time

Status: Open.

#279 In open2c/pairtools;

· sergpolly opened on Oct 28, 2025

Install Error

Status: Open.

#276 In open2c/pairtools;

· WengangXbio opened on Sep 18, 2025

Extract pairs based on overlaps

Status: Open.

#275 In open2c/pairtools;

· jeff-godwin opened on Aug 28, 2025

pairtools merge fails with "Argument list too long"

Status: Open.

#274 In open2c/pairtools;

· aringeri opened on Aug 14, 2025

Warning when running with pysam 0.23.1 leading to non-zero exit code

Status: Open.

#270 In open2c/pairtools;

· prototaxites opened on May 30, 2025

chrom1, chrom2 and pair_type fields are now required in pairs file header

Status: Open.

#264 In open2c/pairtools;

· js2264 opened on Feb 19, 2025

Identical read_len1 and read_len2 reported with different real read lengths in R1&2 pairs

Status: Open.

#262 In open2c/pairtools;

· Phlya opened on Jan 14, 2025

pairtools:Empty of fully duplicated library, can't estimate complexity

Status: Open.

#254 In open2c/pairtools;

· Wong718 opened on Nov 4, 2024

Pairtools phase - issue with phasing

Status: Open.

#253 In open2c/pairtools;

· ddepierre opened on Oct 11, 2024