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820ad4d
Initial commit
james-isbister Dec 11, 2025
f582535
Make endpoint
james-isbister Dec 15, 2025
f1ccfb7
Merge branch 'main' into ion_channel_modeling_beta
james-isbister Jan 17, 2026
0a48555
string_dropdown_parameter_sweep started
james-isbister Jan 17, 2026
2166dce
Merge branch 'new_schema_additions' into ion_channel_modeling_beta
james-isbister Jan 17, 2026
e9789cd
Merge branch 'main' into new_schema_additions
james-isbister Jan 19, 2026
5984f37
wip
james-isbister Jan 19, 2026
72abc44
Update json
james-isbister Jan 19, 2026
d939e96
Updates
james-isbister Jan 19, 2026
bf248f3
Further changes
james-isbister Jan 19, 2026
d24fdd9
string_constant started
james-isbister Jan 19, 2026
82a63b0
Merge branch 'main' into new_schema_additions
james-isbister Jan 23, 2026
ed1e840
remove several changes
james-isbister Jan 23, 2026
a3b0905
wip
james-isbister Jan 23, 2026
3eeab08
wip
james-isbister Jan 23, 2026
18a5cc5
further
james-isbister Jan 23, 2026
d61c33c
further
james-isbister Jan 23, 2026
2bf35bd
wip
james-isbister Jan 23, 2026
bb1cc8c
more
james-isbister Jan 23, 2026
9d6ab61
Move gui definition spec to docs
james-isbister Jan 23, 2026
d566701
Further
james-isbister Jan 23, 2026
e74c720
Move ui_hidden
james-isbister Jan 23, 2026
4406311
Working
james-isbister Jan 23, 2026
93b71a0
Working
james-isbister Jan 23, 2026
1f3bc53
Further changes
james-isbister Jan 26, 2026
39cd2ad
extra changes
james-isbister Jan 26, 2026
ed502f7
Working changes
james-isbister Jan 26, 2026
91c65e4
Merge branch 'main' into new_schema_additions
james-isbister Jan 26, 2026
b59e067
Add images
james-isbister Jan 26, 2026
feddcde
wip
james-isbister Jan 26, 2026
e0950f4
Working changes
james-isbister Jan 26, 2026
8fe9766
wip
james-isbister Jan 26, 2026
9a861c4
Working changes
james-isbister Jan 26, 2026
4c91cae
Working changes
james-isbister Jan 26, 2026
2dc150b
working changes
james-isbister Jan 26, 2026
e6b6b32
Changes
james-isbister Jan 26, 2026
be60506
Merge branch 'main' into new_schema_additions
james-isbister Jan 27, 2026
536d2d6
remove string parameter sweeps
james-isbister Jan 27, 2026
f491e15
newline
james-isbister Jan 27, 2026
23c3ec7
reference schemas updated
james-isbister Jan 27, 2026
9f63e46
Working changes
james-isbister Jan 27, 2026
163470c
Tests started
james-isbister Jan 28, 2026
e6ee2e5
role back temp changes
james-isbister Jan 28, 2026
ff3e571
updated base schema readme
james-isbister Jan 28, 2026
7baef41
Merge branch 'main' into new_schema_additions
james-isbister Jan 28, 2026
9a1b0b1
schema example task started
james-isbister Jan 28, 2026
eee9ec7
Merge branch 'main' into new_schema_additions
james-isbister Jan 28, 2026
ca9733f
Fix schema example
james-isbister Jan 28, 2026
888d23a
start enhanced validations
james-isbister Jan 28, 2026
5c6ea47
validate_enhanced_string_fields started
james-isbister Jan 28, 2026
3bd8447
finish validate_enhanced_string_fields
james-isbister Jan 28, 2026
ef24450
Linting
james-isbister Jan 28, 2026
6328fdd
Merge branch 'new_schema_additions' into ion_channel_modeling_beta
james-isbister Jan 28, 2026
d43be9b
Working changes
james-isbister Jan 28, 2026
f47ef1a
Linting
james-isbister Jan 28, 2026
5b92d68
fixes
james-isbister Jan 28, 2026
231f365
remove comments from markdown and improve string_selection description
james-isbister Jan 29, 2026
7b73ee6
title_by_key proposal
james-isbister Feb 2, 2026
f7f473a
extra
james-isbister Feb 2, 2026
635d05e
Merge and fix
james-isbister Feb 2, 2026
e8f7a41
Remove BlockGroup.Equations key
james-isbister Feb 4, 2026
34ce87a
Add title_by_key tests and updated readme + example
james-isbister Feb 4, 2026
6def901
Add title_by_key to enhanced reference schemas
james-isbister Feb 4, 2026
a523168
Check for dictionary presence before validating dictionaries
james-isbister Feb 4, 2026
86b32c2
Add comment
james-isbister Feb 4, 2026
7577232
Merge branch 'add_title_by_key_to_enhanced' into ion_channel_modeling…
james-isbister Feb 4, 2026
c200c24
Updated ScanConfig
james-isbister Feb 4, 2026
2d4148f
Merge branch 'main' into ion_channel_modeling_beta
james-isbister Feb 4, 2026
ff5c01b
fix additional conflict
james-isbister Feb 4, 2026
19d1494
Add back space
james-isbister Feb 4, 2026
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2 changes: 2 additions & 0 deletions app/endpoints/scan_config.py
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@
MEModelWithSynapsesCircuitSimulationScanConfig,
)
from obi_one.scientific.tasks.ion_channel_modeling import IonChannelFittingScanConfig
from obi_one.scientific.tasks.ion_channel_modeling_beta import IonChannelFittingBetaScanConfig
from obi_one.scientific.tasks.morphology_metrics import (
MorphologyMetricsScanConfig,
)
Expand Down Expand Up @@ -110,6 +111,7 @@ def activate_scan_config_endpoints() -> None:
(ContributeMorphologyScanConfig, "generate", "", True),
(ContributeSubjectScanConfig, "generate", "", True),
(IonChannelFittingScanConfig, "generate", "", False),
(IonChannelFittingBetaScanConfig, "generate", "", True),
(CircuitExtractionScanConfig, "generate", "", False),
(SkeletonizationScanConfig, "generate", "", False),
(SchemaExampleScanConfig, "generate", "", False),
Expand Down
8 changes: 8 additions & 0 deletions obi_one/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -74,6 +74,9 @@
"Info",
"InhibitoryNeurons",
"IntRange",
"IonChannelFittingBetaScanConfig",
"IonChannelFittingBetaSingleConfig",
"IonChannelFittingBetaTask",
"IonChannelFittingScanConfig",
"IonChannelFittingSingleConfig",
"IonChannelFittingTask",
Expand Down Expand Up @@ -340,6 +343,11 @@
IonChannelFittingSingleConfig,
IonChannelFittingTask,
)
from obi_one.scientific.tasks.ion_channel_modeling_beta import (
IonChannelFittingBetaScanConfig,
IonChannelFittingBetaSingleConfig,
IonChannelFittingBetaTask,
)
from obi_one.scientific.tasks.morphology_containerization import (
MorphologyContainerizationScanConfig,
MorphologyContainerizationSingleConfig,
Expand Down
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