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Merge branch 'release-3.x.x' into TASK-7531

Merge branch 'release-3.x.x' into TASK-7531 #2877

Triggered via push May 13, 2025 11:31
@juanfeSanahujajuanfeSanahuja
pushed 7d0c668
TASK-7531
Status Success
Total duration 15m 28s
Artifacts 2

task.yml

on: push
build  /  Build Java app
4m 3s
build / Build Java app
test  /  Execute Sonar Analysis
8m 22s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
7m 39s
test / Execute JUnit and Jacoco tests
deploy-docker  /  Push Docker image
2m 54s
deploy-docker / Push Docker image
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207 errors
OpenCGAWSServerTest.testConnectivity: opencga-server/src/test/java/org/opencb/opencga/server/rest/OpenCGAWSServerTest.java#L80
java.net.ConnectException: Connection refused (Connection refused)
OpenCGAWSServerTest.testConnectivity: opencga-server/src/test/java/org/opencb/opencga/server/rest/OpenCGAWSServerTest.java#L80
java.net.ConnectException: Connection refused (Connection refused)
HadoopVariantStorageMetadataManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/metadata/HadoopVariantStorageMetadataManagerTest.java#L1
Shutting down
HBaseLockManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/utils/HBaseLockManagerTest.java#L1
Shutting down
PersistentResultScannerTest.test: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/utils/PersistentResultScannerTest.java#L1
Shutting down
HadoopVariantStorageEngineArchiveTableTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineArchiveTableTest.java#L1
Shutting down
HadoopVariantStorageEngineBNDTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineBNDTest.java#L1
Shutting down
HadoopVariantStorageEngineDuplicatedTest.testDuplicatedVariant: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineDuplicatedTest.java#L1
Shutting down
HadoopVariantStorageEngineSampleRenamingTest.test: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSampleRenamingTest.java#L1
Shutting down
VariantHadoopDBWriterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopDBWriterTest.java#L1
Shutting down
VariantHadoopStorageEngineNumericSampleTest.index: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineNumericSampleTest.java#L1
Shutting down
VariantHadoopStoragePipelineNoArchiveTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStoragePipelineNoArchiveTest.java#L1
Shutting down
VariantHadoopStoragePipelineTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStoragePipelineTest.java#L1
Shutting down
VariantTableRemoveTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantTableRemoveTest.java#L1
Shutting down
HadoopVariantDBAdaptorMultiFileTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorMultiFileTest.java#L1
Shutting down
FamilyIndexTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/family/FamilyIndexTest.java#L1
Shutting down
HadoopVariantExporterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/io/HadoopVariantExporterTest.java#L1
Shutting down
HadoopVariantScoreLoaderTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/score/HadoopVariantScoreLoaderTest.java#L1
Shutting down
SampleVariantStatsTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/SampleVariantStatsTest.java#L1
Shutting down
HadoopVariantStoragePipelineTransformTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/transform/HadoopVariantStoragePipelineTransformTest.java#L1
Shutting down
HadoopVariantStorageMetadataManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/metadata/HadoopVariantStorageMetadataManagerTest.java#L1
Shutting down
HBaseLockManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/utils/HBaseLockManagerTest.java#L1
Shutting down
PersistentResultScannerTest.test: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/utils/PersistentResultScannerTest.java#L1
Shutting down
HadoopVariantStorageEngineArchiveTableTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineArchiveTableTest.java#L1
Shutting down
HadoopVariantStorageEngineBNDTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineBNDTest.java#L1
Shutting down
HadoopVariantStorageEngineDuplicatedTest.testDuplicatedVariant: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineDuplicatedTest.java#L1
Shutting down
HadoopVariantStorageEngineSampleRenamingTest.test: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSampleRenamingTest.java#L1
Shutting down
VariantHadoopDBWriterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopDBWriterTest.java#L1
Shutting down
VariantHadoopStorageEngineNumericSampleTest.index: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineNumericSampleTest.java#L1
Shutting down
VariantHadoopStoragePipelineNoArchiveTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStoragePipelineNoArchiveTest.java#L1
Shutting down
VariantHadoopStoragePipelineTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStoragePipelineTest.java#L1
Shutting down
VariantTableRemoveTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantTableRemoveTest.java#L1
Shutting down
HadoopVariantDBAdaptorMultiFileTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorMultiFileTest.java#L1
Shutting down
FamilyIndexTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/family/FamilyIndexTest.java#L1
Shutting down
HadoopVariantExporterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/io/HadoopVariantExporterTest.java#L1
Shutting down
HadoopVariantScoreLoaderTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/score/HadoopVariantScoreLoaderTest.java#L1
Shutting down
SampleVariantStatsTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/SampleVariantStatsTest.java#L1
Shutting down
HadoopVariantStoragePipelineTransformTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/transform/HadoopVariantStoragePipelineTransformTest.java#L1
Shutting down
AutoScaleHBaseTableTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/AutoScaleHBaseTableTest.java#L1
Shutting down
HadoopVariantStorageEngineSVTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSVTest.java#L1
Shutting down
HadoopVariantStorageEngineSplitDataTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSplitDataTest.java#L1
Shutting down
HadoopVariantStorageEngineTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineTest.java#L1
Shutting down
VariantHadoopNamespaceTest.testNoNamespace: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopNamespaceTest.java#L1
Shutting down
VariantHadoopNamespaceTest.testNamespace: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopNamespaceTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsNoGTTwoFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsExcludeGTAuto: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexExcludeGenotype: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsExcludeGT: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsNoGTSingleFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
HadoopVariantDBAdaptorNativeTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorNativeTest.java#L1
Shutting down
HadoopVariantDBAdaptorTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorTest.java#L1
Shutting down
FisherTestDriverTest.testFisher: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/analysis/gwas/FisherTestDriverTest.java#L1
Shutting down
HadoopVariantAnnotationManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
Shutting down
FillGapsTest.testFillGapsPlatinumFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillMissingPlatinumFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsGiabChinesse: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsPlatinumFilesMultiFileBatch: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsConflictingFilesNonRef: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillMissingFilterNonRef: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsImpact: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsConflictingFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsCorpasome: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsVcfFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
SampleIndexDuplicatedVariantsTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexDuplicatedVariantsTest.java#L1
Shutting down
SampleIndexTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexTest.java#L1
Shutting down
VariantPruneManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/prune/VariantPruneManagerTest.java#L1
Shutting down
HadoopVariantQueryExecutorTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/query/executors/HadoopVariantQueryExecutorTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedExacTest.calculateAggregatedStatsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedExacTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedExacTest.calculateAggregatedStatsNonAggregatedStudyTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedExacTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedTest.calculateAggregatedStatsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedTest.calculateAggregatedStatsNonAggregatedStudyTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedTest.java#L1
Shutting down
HadoopVariantStatisticsManagerMultiFilesTest.calculateStatsMultiCohortsAfterFillMissingTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerMultiFilesTest.java#L1
Shutting down
HadoopVariantStatisticsManagerMultiFilesTest.calculateStatsMultiCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerMultiFilesTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.testStatsToFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.testJulieTool: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.calculateStatsSeparatedCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.queryInvalidStats: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.calculateStatsMultiCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantWalkerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/walker/HadoopVariantWalkerTest.java#L1
Shutting down
AutoScaleHBaseTableTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/AutoScaleHBaseTableTest.java#L1
Shutting down
HadoopVariantStorageEngineSVTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSVTest.java#L1
Shutting down
HadoopVariantStorageEngineSplitDataTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineSplitDataTest.java#L1
Shutting down
HadoopVariantStorageEngineTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineTest.java#L1
Shutting down
HadoopVariantStorageSearchIntersectTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageSearchIntersectTest.java#L1
Shutting down
VariantHadoopNamespaceTest.testNoNamespace: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopNamespaceTest.java#L1
Shutting down
VariantHadoopNamespaceTest.testNamespace: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopNamespaceTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsNoGTTwoFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsExcludeGTAuto: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexExcludeGenotype: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsExcludeGT: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
VariantHadoopStorageEngineSomaticTest.indexWithOtherFieldsNoGTSingleFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/VariantHadoopStorageEngineSomaticTest.java#L1
Shutting down
HadoopVariantDBAdaptorNativeTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorNativeTest.java#L1
Shutting down
HadoopVariantDBAdaptorTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/adaptors/HadoopVariantDBAdaptorTest.java#L1
Shutting down
FisherTestDriverTest.testFisher: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/analysis/gwas/FisherTestDriverTest.java#L1
Shutting down
HadoopVariantAnnotationManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
Shutting down
FillGapsTest.testFillGapsPlatinumFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillMissingPlatinumFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsGiabChinesse: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsPlatinumFilesMultiFileBatch: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsConflictingFilesNonRef: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillMissingFilterNonRef: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsImpact: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsConflictingFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsCorpasome: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
FillGapsTest.testFillGapsVcfFiles: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/gaps/FillGapsTest.java#L1
Shutting down
SampleIndexDuplicatedVariantsTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexDuplicatedVariantsTest.java#L1
Shutting down
SampleIndexTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/index/sample/SampleIndexTest.java#L1
Shutting down
VariantPruneManagerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/prune/VariantPruneManagerTest.java#L1
Shutting down
HadoopVariantQueryExecutorTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/query/executors/HadoopVariantQueryExecutorTest.java#L1
Shutting down
HadoopVariantSearchIndexTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/search/HadoopVariantSearchIndexTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedExacTest.calculateAggregatedStatsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedExacTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedExacTest.calculateAggregatedStatsNonAggregatedStudyTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedExacTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedTest.calculateAggregatedStatsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedTest.java#L1
Shutting down
HadoopVariantStatisticsManagerAggregatedTest.calculateAggregatedStatsNonAggregatedStudyTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerAggregatedTest.java#L1
Shutting down
HadoopVariantStatisticsManagerMultiFilesTest.calculateStatsMultiCohortsAfterFillMissingTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerMultiFilesTest.java#L1
Shutting down
HadoopVariantStatisticsManagerMultiFilesTest.calculateStatsMultiCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerMultiFilesTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.testStatsToFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.testJulieTool: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.calculateStatsSeparatedCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.queryInvalidStats: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantStatisticsManagerTest.calculateStatsMultiCohortsTest: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/stats/HadoopVariantStatisticsManagerTest.java#L1
Shutting down
HadoopVariantWalkerTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/walker/HadoopVariantWalkerTest.java#L1
Shutting down
AlignmentAnalysisTest.testReadOnlyAlignmentIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L121
Shutting down
AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.geneCoverageStatsTest[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.testNonReadOnlyAlignmentIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L1
Shutting down
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L1
Shutting down
AlignmentAnalysisTest.testReadOnlyAlignmentIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L121
Shutting down
AlignmentAnalysisTest.testNonReadOnlyCoverageIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.geneCoverageStatsTest[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.testReadOnlyCoverageIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
AlignmentAnalysisTest.testNonReadOnlyAlignmentIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/alignment/AlignmentAnalysisTest.java#L217
Could not find database for organization 'test'
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L1
Shutting down
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L1
Shutting down
VariantOperationsTest.testCellbaseConfigure[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testSetup[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantFileReload[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testGwasIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondarySampleIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondaryAnnotationIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondarySampleIndexPartialFamily[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantAnalysisTest.testSampleStatsWithGeneFilter[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L254
java.io.IOException: Failed to get result within timeout, timeout=60000ms
VariantAnalysisTest.testCohortStatsIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testHRDetectParseResults[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testVariantStatsTwoCohorts[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testCellbaseConfigure[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testSampleStatsFromOffspringFilter[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testPedigreeGraph[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testVariantStats[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testGwas[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testVariantStatsWithFilter[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testKnockoutGenesByBiotype[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testClinicalAnalysisLoading[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testHRDetect[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testMalformedVcfFileIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testSampleStats[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testExportTped[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testGwasByPhenotype[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testMutationalSignatureFittingSNV[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testKnockoutGenesSpecificGenesAndBiotypeProteinCoding[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testCohortStats[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testKnockoutGenesSpecificGenesAndBiotypeNMD[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testSampleStatsSampleFilter[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testExportVep[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testExport[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testSampleMultiVariantFilterAnalysis[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testMutationalSignatureFittingSV[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testMutationalSignatureCatalogueSV[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testKnockoutGenes[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantAnalysisTest.testKnockoutGenesSpecificGenes[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/VariantAnalysisTest.java#L171
Shutting down
VariantOperationsTest.testCellbaseConfigure[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testSetup[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantFileReload[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testGwasIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondarySampleIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondaryAnnotationIndex[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
VariantOperationsTest.testVariantSecondarySampleIndexPartialFamily[hadoop]: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantOperationsTest.java#L148
Shutting down
HadoopVariantStorageEngineTest.multiIndex: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineTest.java#L1
Can't calculate stats.
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionInvalidCosmicFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/myannot.vcf
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingCosmicVersion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionWithCosmicAnnotation: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMismatchAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantStorageEngineTest.multiIndex: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineTest.java#L1
Can't calculate stats.
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionInvalidCosmicFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/myannot.vcf
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingCosmicVersion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionWithCosmicAnnotation: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMismatchAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionInvalidCosmicFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/myannot.vcf
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingCosmicVersion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionWithCosmicAnnotation: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMismatchAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionInvalidCosmicFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/myannot.vcf
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingCosmicVersion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionWithCosmicAnnotation: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMismatchAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantStorageEngineTest.multiIndex: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/HadoopVariantStorageEngineTest.java#L1
Can't calculate stats.
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionInvalidCosmicFile: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/myannot.vcf
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMissingCosmicVersion: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionWithCosmicAnnotation: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz
HadoopVariantAnnotationManagerTest.testCosmicAnnotatorExtensionMismatchAssembly: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/annotation/HadoopVariantAnnotationManagerTest.java#L1
file:/home/runner/work/opencga/opencga/opencga-storage/opencga-storage-core/target/opencga-storage-core-3.5.0-SNAPSHOT-tests.jar!/custom_annotation/cosmic.small.tsv.gz

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build-folder Expired
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junit_hdp3.1_short_opencga.log Expired
99.1 KB
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