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Merge from develop Push OpenCGA TASK #3779: Commit 1a06014 pushed by imedina
6m 49s TASK-8076
TASK-8076
6m 49s
Merge branch 'develop' into TASK-8076 Push OpenCGA TASK #3778: Commit 7d1c0cc pushed by imedina
6m 54s TASK-8076
TASK-8076
6m 54s
analysis: fix custom diplotype annotation being replaced by CPIC anno… Push OpenCGA TASK #3777: Commit 7393bea pushed by imedina
6m 52s TASK-8076
TASK-8076
6m 52s
catalog: add Emedgene HL7 v2 JSON import for ClinicalAnalysis #TASK-8076 Push OpenCGA TASK #3776: Commit 6c191ef pushed by imedina
8m 16s TASK-8076
TASK-8076
8m 16s
analysis: add custom diplotype annotation support to PGx tool #TASK-8076 Push OpenCGA TASK #3775: Commit 861ccd6 pushed by imedina
7m 40s TASK-8076
TASK-8076
7m 40s
Push OpenCGA TASK Push OpenCGA TASK #3774: by imedina
7m 54s TASK-8076
TASK-8076
7m 54s
analysis: openarray analysis create the samples and individuals if th… Push OpenCGA TASK #3773: Commit ca2f1bc pushed by imedina
7m 36s TASK-8076
TASK-8076
7m 36s
catalog: add samplesheet registration with REST endpoint and tests #T… Push OpenCGA TASK #3772: Commit 776e7b5 pushed by imedina
7m 40s TASK-8076
TASK-8076
7m 40s
analysis: fix CPIC annotator null guidelineid causing 400 errors #TAS… Push OpenCGA TASK #3771: Commit df276d5 pushed by imedina
8m 1s TASK-8076
TASK-8076
8m 1s
analysis: fix summary stats counting for genes and drugs #TASK-8076 Push OpenCGA TASK #3770: Commit a3f4b2d pushed by imedina
8m 4s TASK-8076
TASK-8076
8m 4s
catalog: add analysis field to IndividualMongoDBAdaptor update params… Push OpenCGA TASK #3769: Commit c9611aa pushed by imedina
7m 16s TASK-8076
TASK-8076
7m 16s
core: increase MAXIMUM_LINES_CONTENT from 1000 to 5000 #TASK-8076 Push OpenCGA TASK #3768: Commit d31ba0e pushed by imedina
7m 10s TASK-8076
TASK-8076
7m 10s
analysis: fix executor to run Python CLI locally instead of Docker #T… Push OpenCGA TASK #3767: Commit 0c6f311 pushed by imedina
7m 8s TASK-8076
TASK-8076
7m 8s
docker: install uv in opencga-base and fix executor Python CLI path #… Push OpenCGA TASK #3766: Commit 86db25d pushed by imedina
15m 40s TASK-8076
TASK-8076
15m 40s
core: reorder params and rename compareTo to compareToFile #TASK-8076 Push OpenCGA TASK #3765: Commit f669dc7 pushed by imedina
8m 3s TASK-8076
TASK-8076
8m 3s
analysis: handle ambiguous diplotypes and improve comparison matching… Push OpenCGA TASK #3764: Commit 7938c8d pushed by imedina
16m 26s TASK-8076
TASK-8076
16m 26s
analysis: update Individual catalog with PGx summary after executor c… Push OpenCGA TASK #3763: Commit 6fb1a39 pushed by imedina
15m 23s TASK-8076
TASK-8076
15m 23s
clients: new individual analaysis object Push OpenCGA TASK #3762: Commit b7f0390 pushed by imedina
15m 3s TASK-8076
TASK-8076
15m 3s
catalog: add pharmacogenomics analysis field to Individual entity #TA… Push OpenCGA TASK #3761: Commit 6e4c511 pushed by imedina
15m 37s TASK-8076
TASK-8076
15m 37s
clients: new pgx analysis updated Push OpenCGA TASK #3760: Commit f28ca2d pushed by imedina
18m 37s TASK-8076
TASK-8076
18m 37s
analysis: add CPIC allele location models to Python pharmacogenomics … Push OpenCGA TASK #3759: Commit d3d26c3 pushed by imedina
15m 43s TASK-8076
TASK-8076
15m 43s
analysis: improve CPIC annotation by adding the allele_location_value… Push OpenCGA TASK #3758: Commit 8a3d780 pushed by jtarraga
15m 56s TASK-8076
TASK-8076
15m 56s
analysis: enhance allele typing and CPIC annotation handling Push OpenCGA TASK #3757: Commit 4797a79 pushed by imedina
15m 36s TASK-8076
TASK-8076
15m 36s
tests: ignore test, #TASK-8076 Push OpenCGA TASK #3756: Commit 4bf5611 pushed by jtarraga
15m 12s TASK-8076
TASK-8076
15m 12s
analysis: save the pharmacogenomics annotation in the sample attribut… Push OpenCGA TASK #3755: Commit 5e9f8ec pushed by jtarraga
12m 28s TASK-8076
TASK-8076
12m 28s