Update codecov.yml #132
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| name: MATLAB Tests and Code Coverage | |
| on: | |
| pull_request: | |
| branches: | |
| - '**' | |
| jobs: | |
| build: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Checkout PR Code | |
| uses: actions/checkout@v4 | |
| - name: Clone COBRA Toolbox | |
| run: | | |
| git clone -b develop https://github.com/opencobra/cobratoolbox.git cobratoolbox | |
| - name: Run MATLAB Tests | |
| run: | | |
| matlab -batch "run('cobratoolbox/initCobraToolbox.m'); diary('test_results.txt'); run('cobratoolbox/test/testAll.m'); diary off;" | |
| - name: Upload Test Report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-report | |
| path: test_results.txt | |
| # Parse Test Results and Comment on PR using regex | |
| - name: Parse Test Results and Comment on PR | |
| uses: actions/github-script@v5 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| script: | | |
| const fs = require('fs'); | |
| const xml = fs.readFileSync('CodeCovTestResults.xml', 'utf8'); | |
| // Extract data using regex | |
| const passedRegex = /tests="(\d+)" failures="(\d+)" errors="(\d+)" skipped="(\d+)"/; | |
| const matches = passedRegex.exec(xml); | |
| const totalTests = matches[1]; | |
| const failures = matches[2]; | |
| const errors = matches[3]; | |
| const skipped = matches[4]; | |
| let summary = `Test Results: Passed: ${totalTests - failures - skipped}, Failed: ${failures}, Errors: ${errors}, Skipped: ${skipped}`; | |
| // Find failed tests | |
| const failedTestsRegex = /<testcase classname="[^"]*" name="([^"]+)"[^>]*>\s*<error[^>]*>([^<]*)<\/error>/g; | |
| let failedTestDetails = ''; | |
| let match; | |
| while ((match = failedTestsRegex.exec(xml)) !== null) { | |
| failedTestDetails += `\n* ${match[1]}: ${match[2]}`; | |
| } | |
| if (failedTestDetails.length > 0) { | |
| summary += `\n\nFailed Tests:${failedTestDetails}`; | |
| } | |
| github.rest.issues.createComment({ | |
| issue_number: context.issue.number, | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| body: summary | |
| }); |