update Function Docs (Automatic Workflow)

docs/modules/analysis/multiSpecies/microbiomeModelingToolbox/mgPipe/index.html

@@ -757,7 +757,7 @@ <h1>The COBRA Toolbox</h1>
 
 <dl class="mat function">
 <dt class="sig sig-object mat" id="src.analysis.multiSpecies.microbiomeModelingToolbox.mgPipe.mgPipe">
-<span class="sig-name descname"><span class="pre">mgPipe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="pre">modPath</span></em>, <em class="sig-param"><span class="pre">abunFilePath</span></em>, <em class="sig-param"><span class="pre">computeProfiles</span></em>, <em class="sig-param"><span class="pre">resPath</span></em>, <em class="sig-param"><span class="pre">dietFilePath</span></em>, <em class="sig-param"><span class="pre">infoFilePath</span></em>, <em class="sig-param"><span class="pre">biomasses</span></em>, <em class="sig-param"><span class="pre">hostPath</span></em>, <em class="sig-param"><span class="pre">hostBiomassRxn</span></em>, <em class="sig-param"><span class="pre">hostBiomassRxnFlux</span></em>, <em class="sig-param"><span class="pre">figForm</span></em>, <em class="sig-param"><span class="pre">numWorkers</span></em>, <em class="sig-param"><span class="pre">rDiet</span></em>, <em class="sig-param"><span class="pre">pDiet</span></em>, <em class="sig-param"><span class="pre">lowerBMBound</span></em>, <em class="sig-param"><span class="pre">upperBMBound</span></em>, <em class="sig-param"><span class="pre">includeHumanMets</span></em>, <em class="sig-param"><span class="pre">adaptMedium</span></em>, <em class="sig-param"><span class="pre">pruneModels</span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/multiSpecies/microbiomeModelingToolbox/mgPipe/mgPipe.m"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#src.analysis.multiSpecies.microbiomeModelingToolbox.mgPipe.mgPipe" title="Permalink to this definition">¶</a></dt>
+<span class="sig-name descname"><span class="pre">mgPipe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="pre">modPath</span></em>, <em class="sig-param"><span class="pre">abunFilePath</span></em>, <em class="sig-param"><span class="pre">computeProfiles</span></em>, <em class="sig-param"><span class="pre">resPath</span></em>, <em class="sig-param"><span class="pre">dietFilePath</span></em>, <em class="sig-param"><span class="pre">infoFilePath</span></em>, <em class="sig-param"><span class="pre">biomasses</span></em>, <em class="sig-param"><span class="pre">hostPath</span></em>, <em class="sig-param"><span class="pre">hostBiomassRxn</span></em>, <em class="sig-param"><span class="pre">hostBiomassRxnFlux</span></em>, <em class="sig-param"><span class="pre">figForm</span></em>, <em class="sig-param"><span class="pre">numWorkers</span></em>, <em class="sig-param"><span class="pre">rDiet</span></em>, <em class="sig-param"><span class="pre">pDiet</span></em>, <em class="sig-param"><span class="pre">lowerBMBound</span></em>, <em class="sig-param"><span class="pre">upperBMBound</span></em>, <em class="sig-param"><span class="pre">includeHumanMets</span></em>, <em class="sig-param"><span class="pre">adaptMedium</span></em>, <em class="sig-param"><span class="pre">pruneModels</span></em>, <em class="sig-param"><span class="pre">solver</span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/opencobra/cobratoolbox/blob/master/src/analysis/multiSpecies/microbiomeModelingToolbox/mgPipe/mgPipe.m"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#src.analysis.multiSpecies.microbiomeModelingToolbox.mgPipe.mgPipe" title="Permalink to this definition">¶</a></dt>
 <dd><p>mgPipe is a MATLAB based pipeline to integrate microbial abundances
 (coming from metagenomic data) with constraint based modeling, creating
 individuals’ personalized models.