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Merge pull request #2300 from pavan-kumar-s/gh-pages
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Updated the tutorial webpages to include top images and to updated search box in all the webpages
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@rmtfleming
rmtfleming authored Sep 26, 2024
2 parents c09c09d + 65096b7 commit bd803b0
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15 changes: 8 additions & 7 deletions stable/tutorials/HOLDER_TEMPLATE.html
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Expand Up @@ -122,7 +122,7 @@ <h1>The COBRA Toolbox</h1>
template: {
type: "custom",
method: function(value, item) {
return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
}
},

Expand Down Expand Up @@ -157,6 +157,7 @@ <h1>The COBRA Toolbox</h1>
<li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
<li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
</ul>


Expand Down Expand Up @@ -195,36 +196,36 @@ <h1>The COBRA Toolbox</h1>
<div class="wrapper">
<ul class="metro">
<li class="small-tile-text color_class5 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
<img src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png" height="90px" alt="PDF file">
<a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
<img src="../_static/img/icon5.png" height="90px" alt="PDF file">
</a>
<div>Download PDF</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class6 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
<img src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png" height="90px" alt="live Script">
<img src="../_static/img/icon6.png" height="90px" alt="live Script">
</a>
<div>Download live Script</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class7 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
<img src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png" height="90px" alt="m file">
<img src="../_static/img/icon7.png" height="90px" alt="m file">
</a>
<div>Download m file</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class8 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
<img src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png" height="90px" alt="GitHub">
<img src="../_static/img/icon8.png" height="90px" alt="GitHub">
</a>
<div>View on GitHub</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class2 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
<img src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png" height="90px" alt="tutorials">
<img src="../_static/img/icon2.png" height="90px" alt="tutorials">
</a>
<div>Tutorials</div>
</li>
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31 changes: 16 additions & 15 deletions stable/tutorials/TEST3.html
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Expand Up @@ -80,7 +80,7 @@ <h1>The COBRA Toolbox</h1>
template: {
type: "custom",
method: function(value, item) {
return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
}
},

Expand Down Expand Up @@ -126,6 +126,7 @@ <h1>The COBRA Toolbox</h1>
<li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
<li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
</ul>
</div>
</div>
Expand Down Expand Up @@ -153,7 +154,7 @@ <h1>The COBRA Toolbox</h1>
<style>h2 {font-size:0px;}</style><div class="section" id="analysis">
<h2>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox analysis">
<div class="sectionLogo"><img alt="analysis" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_analysis_wb.png"/></div>
<div class="sectionLogo"><img alt="analysis" class="avatar" src="../_static/cobratoolbox/img/icon_analysis_wb.png"/></div>
<div class="sectionTitle"><h3>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialAtomicallyResolveReconstruction.html
Expand Down Expand Up @@ -206,7 +207,7 @@ <h2>Analysis<a class="headerlink" href="#analysis" title="Permalink to this head
<div class="section" id="base">
<h2>Base<a class="headerlink" href="#base" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox base">
<div class="sectionLogo"><img alt="base" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_base_wb.png"/></div>
<div class="sectionLogo"><img alt="base" class="avatar" src="../_static/cobratoolbox/img/icon_base_wb.png"/></div>
<div class="sectionTitle"><h3>Base<a class="headerlink" href="#base" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialContribute.html
Expand All @@ -227,7 +228,7 @@ <h2>Base<a class="headerlink" href="#base" title="Permalink to this headline">¶
<div class="section" id="data-integration">
<h2>Data integration<a class="headerlink" href="#data-integration" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox dataIntegration">
<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="../_static/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
<div class="sectionTitle"><h3>Data integration<a class="headerlink" href="#dataIntegration" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialExtractionTranscriptomic.html
Expand All @@ -241,7 +242,7 @@ <h2>Data integration<a class="headerlink" href="#data-integration" title="Permal
<div class="section" id="design">
<h2>Design<a class="headerlink" href="#design" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox design">
<div class="sectionLogo"><img alt="design" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_design_wb.png"/></div>
<div class="sectionLogo"><img alt="design" class="avatar" src="../_static/cobratoolbox/img/icon_design_wb.png"/></div>
<div class="sectionTitle"><h3>Design<a class="headerlink" href="#design" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialOptForceGAMS.html
Expand All @@ -255,7 +256,7 @@ <h2>Design<a class="headerlink" href="#design" title="Permalink to this headline
<div class="section" id="reconstruction">
<h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox reconstruction">
<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="../_static/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
<div class="sectionTitle"><h3>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialCOBRAconcepts.html
Expand Down Expand Up @@ -288,7 +289,7 @@ <h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink
<li></li>
</ul>
<div class="tutorialSectionBox">
<div class="sectionLogo"><img alt="" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon__wb.png"/></div>
<div class="sectionLogo"><img alt="" class="avatar" src="../_static/cobratoolbox/img/icon__wb.png"/></div>
<div class="sectionTitle"><h3><a class="headerlink" href="#" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialTemplate.html
Expand All @@ -299,7 +300,7 @@ <h2>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink
<div class="section" id="visualization">
<h2>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox visualization">
<div class="sectionLogo"><img alt="visualization" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_visualization_wb.png"/></div>
<div class="sectionLogo"><img alt="visualization" class="avatar" src="../_static/cobratoolbox/img/icon_visualization_wb.png"/></div>
<div class="sectionTitle"><h3>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialCellDesigner.html
Expand Down Expand Up @@ -414,7 +415,7 @@ <h2>Other<a class="headerlink" href="#other" title="Permalink to this headline">
<div class="section" id="id4">
<h2>Analysis<a class="headerlink" href="#id4" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox analysis">
<div class="sectionLogo"><img alt="analysis" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_analysis_wb.png"/></div>
<div class="sectionLogo"><img alt="analysis" class="avatar" src="../_static/cobratoolbox/img/icon_analysis_wb.png"/></div>
<div class="sectionTitle"><h3>Analysis<a class="headerlink" href="#analysis" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialAtomicallyResolveReconstruction.html
Expand Down Expand Up @@ -467,7 +468,7 @@ <h2>Analysis<a class="headerlink" href="#id4" title="Permalink to this headline"
<div class="section" id="id5">
<h2>Base<a class="headerlink" href="#id5" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox base">
<div class="sectionLogo"><img alt="base" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_base_wb.png"/></div>
<div class="sectionLogo"><img alt="base" class="avatar" src="../_static/cobratoolbox/img/icon_base_wb.png"/></div>
<div class="sectionTitle"><h3>Base<a class="headerlink" href="#base" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialContribute.html
Expand All @@ -488,7 +489,7 @@ <h2>Base<a class="headerlink" href="#id5" title="Permalink to this headline">¶<
<div class="section" id="id6">
<h2>Data integration<a class="headerlink" href="#id6" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox dataIntegration">
<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
<div class="sectionLogo"><img alt="dataIntegration" class="avatar" src="../_static/cobratoolbox/img/icon_dataIntegration_wb.png"/></div>
<div class="sectionTitle"><h3>Data integration<a class="headerlink" href="#dataIntegration" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialExtractionTranscriptomic.html
Expand All @@ -502,7 +503,7 @@ <h2>Data integration<a class="headerlink" href="#id6" title="Permalink to this h
<div class="section" id="id7">
<h2>Design<a class="headerlink" href="#id7" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox design">
<div class="sectionLogo"><img alt="design" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_design_wb.png"/></div>
<div class="sectionLogo"><img alt="design" class="avatar" src="../_static/cobratoolbox/img/icon_design_wb.png"/></div>
<div class="sectionTitle"><h3>Design<a class="headerlink" href="#design" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialOptForceGAMS.html
Expand All @@ -516,7 +517,7 @@ <h2>Design<a class="headerlink" href="#id7" title="Permalink to this headline">
<div class="section" id="id8">
<h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox reconstruction">
<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
<div class="sectionLogo"><img alt="reconstruction" class="avatar" src="../_static/cobratoolbox/img/icon_reconstruction_wb.png"/></div>
<div class="sectionTitle"><h3>Reconstruction<a class="headerlink" href="#reconstruction" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialCOBRAconcepts.html
Expand Down Expand Up @@ -549,7 +550,7 @@ <h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this hea
<li></li>
</ul>
<div class="tutorialSectionBox">
<div class="sectionLogo"><img alt="" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon__wb.png"/></div>
<div class="sectionLogo"><img alt="" class="avatar" src="../_static/cobratoolbox/img/icon__wb.png"/></div>
<div class="sectionTitle"><h3><a class="headerlink" href="#" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialTemplate.html
Expand All @@ -560,7 +561,7 @@ <h2>Reconstruction<a class="headerlink" href="#id8" title="Permalink to this hea
<div class="section" id="id9">
<h2>Visualization<a class="headerlink" href="#id9" title="Permalink to this headline"></a></h2>
<div class="tutorialSectionBox visualization">
<div class="sectionLogo"><img alt="visualization" class="avatar" src="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/img/icon_visualization_wb.png"/></div>
<div class="sectionLogo"><img alt="visualization" class="avatar" src="../_static/cobratoolbox/img/icon_visualization_wb.png"/></div>
<div class="sectionTitle"><h3>Visualization<a class="headerlink" href="#visualization" title="Permalink to this headline"></a></h3></div>
<div class="sectionContent"><ul class="simple">
QWERTYtutorialCellDesigner.html
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15 changes: 8 additions & 7 deletions stable/tutorials/createMeIntrcNetworkTutorial.html
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Expand Up @@ -78,7 +78,7 @@ <h1>The COBRA Toolbox</h1>
template: {
type: "custom",
method: function(value, item) {
return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
}
},

Expand Down Expand Up @@ -109,6 +109,7 @@ <h1>The COBRA Toolbox</h1>
<li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
<li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
</ul>
</div>
</div>
Expand Down Expand Up @@ -136,36 +137,36 @@ <h1>The COBRA Toolbox</h1>
<div class="wrapper">
<ul class="metro">
<li class="small-tile-text color_class5 scale-10">
<a class="tile" href="http://gibbs.unal.edu.co/cobradoc/cobratoolbox/tutorials/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.pdf" style="width: 90px; height: 90px;">
<img alt="PDF file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon5.png"/>
<a class="tile" href="../_static/cobratoolbox/tutorials/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.pdf" style="width: 90px; height: 90px;">
<img alt="PDF file" height="90px" src="../_static/img/icon5.png"/>
</a>
<div>Download PDF</div>
</li>

<li class="small-tile-text color_class6 scale-10">
<a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.mlx" style="width: 90px; height: 90px;">
<img alt="live Script" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon6.png"/>
<img alt="live Script" height="90px" src="../_static/img/icon6.png"/>
</a>
<div>Download live Script</div>
</li>

<li class="small-tile-text color_class7 scale-10">
<a class="tile" href="https://github.com/opencobra/COBRA.tutorials/raw/master/visualization/createMetIntrcNetworkTutorial/createMetIntrcNetworkTutorial.m" style="width: 90px; height: 90px;">
<img alt="m file" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon7.png"/>
<img alt="m file" height="90px" src="../_static/img/icon7.png"/>
</a>
<div>Download m file</div>
</li>

<li class="small-tile-text color_class8 scale-10">
<a class="tile" href="https://github.com/opencobra/COBRA.tutorials/tree/master/visualization/createMetIntrcNetworkTutorial" style="width: 90px; height: 90px;">
<img alt="GitHub" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon8.png"/>
<img alt="GitHub" height="90px" src="../_static/img/icon8.png"/>
</a>
<div>View on GitHub</div>
</li>

<li class="small-tile-text color_class2 scale-10">
<a class="tile" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html" style="width: 90px; height: 90px;">
<img alt="tutorials" height="90px" src="http://gibbs.unal.edu.co/cobradoc/img/icon2.png"/>
<img alt="tutorials" height="90px" src="../_static/img/icon2.png"/>
</a>
<div>Tutorials</div>
</li>
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2 changes: 1 addition & 1 deletion stable/tutorials/index.html
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Expand Up @@ -86,7 +86,7 @@ <h1>
template: {
type: "custom",
method: function(value, item) {
return "<span><a href='../search.html?q=" + item.name + "&check_keywords=yes&area=default'>" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
}
},

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