Develop

.github/workflows/cobratoolboxCI.yml

@@ -0,0 +1,29 @@
+name: Example
+on:
+  pull_request:
+    branches:
+      - master
+      - main
+      - develop
+jobs:
+  build:
+    runs-on: self-hosted
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Merge base branch into PR
+        run: |
+          git fetch origin ${{ github.base_ref }}
+          git merge origin/${{ github.base_ref }}
+
+      - name: Run MATLAB Tests
+        run: |
+          matlab -batch "run('initCobraToolbox.m'); run('test/testAll.m');"
+
+      - name: Upload test results to Codecov
+        uses: codecov/test-results-action@v1
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: testReport.junit.xml  

codecov.yml

@@ -1,20 +1,7 @@
-# codecov.yml
-
-# Comment settings
 comment:
-  layout: "reach, diff, flags, files"
-  behavior: default  # Shows the comment only on the first push of a pull request
-  require_changes: true  # Only comment if there are coverage changes
-
-# Coverage status checks
-coverage:
-  status:
-    project:
-      default:
-        target: auto  # Automatically adjust coverage goal
-        threshold: 1%  # Fail PRs that reduce coverage by more than 1%
-    patch:
-      default:
-        target: auto
-        threshold: 1%
-
+  layout: "header, diff, flags, components, files, footer"
+  behavior: default
+  require_changes: false
+  require_base: false
+  require_head: true
+  hide_project_coverage: false

test/testAll.m

@@ -184,7 +184,8 @@
         fprintf(['\n > ', num2str(sumFailed), ' tests failed. ', num2str(sumSkipped), ' tests were skipped due to missing requirements.\n\n']);
         %% NEW: Generate JUnit XML report for Codecov
 
-        xmlFileName = 'CodeCovTestResults.xml';
+        xmlFileName = 'testReport.junit.xml';
+
         fid = fopen(xmlFileName, 'w');
         if fid == -1
             error('Could not open file for writing: %s', xmlFileName);