openpipeline/src/compression/tar_extract/config.vsh.yaml at 846ad62f325e91dbe7d276bc70c0204118150891 · openpipelines-bio/openpipeline · GitHub

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name: tar_extract
namespace: compression
scope: public
status: deprecated
description: Extract files from a tar archive
arguments:
  - name: "--input"
    alternatives: ["-i"]
    type: file
    description: Input file
    direction: input
    example: input.tar.gz
    required: true
  - name: "--output"
    alternatives: ["-o"]
    type: file
    description: Folder to restore file(s) to.
    direction: output
    example: output_folder
    required: true
  - name: "--strip_components"
    alternatives: ["-s"]
    type: integer
    description: Strip this amount of leading components from file names on extraction. For example, to extract only 'myfile.txt' from an archive containing the structure `this/goes/deep/myfile.txt', use 3 to strip 'this/goes/deep/'.
    example: 1
    required: false
  - name: "--exclude"
    alternatives: ["-e"]
    type: string
    description: Prevents any file or member whose name matches the shell wildcard (pattern) from being extracted.
    example: "docs/figures"
    required: false
resources:
  - type: bash_script
    path: script.sh
test_resources:
  - type: bash_script
    path: test.sh
  - path: ../../../LICENSE

engines:
  - type: docker
    image: ubuntu:latest

runners:
  - type: executable
  - type: nextflow
    directives:
      label: [ singlecpu, lowmem ]