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Pull requests: openpipelines-bio/openpipeline
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Add optional quantile filtering to processing workflows
#1200
opened Jun 9, 2026 by
dorien-er
Contributor
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2 of 10 tasks
add qc metric calculation to single sample workflow
#1199
opened Jun 9, 2026 by
dorien-er
Contributor
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10 tasks
Surface scrublet params in single sample processing workflows
#1198
opened Jun 9, 2026 by
dorien-er
Contributor
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10 tasks
Always store details in
highly_variable_features_scanpy
#1186
opened May 6, 2026 by
lazappi
Contributor
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5 of 10 tasks
Store flavor in
highly_variable_features_scanpy
#1185
opened May 6, 2026 by
lazappi
Contributor
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5 of 10 tasks
Support identical fastq filenames for multiple flow cell directories.
#1172
opened Apr 22, 2026 by
DriesSchaumont
Member
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10 tasks
support for conversion of cellranger filtered h5 to h5mu
#1170
opened Apr 22, 2026 by
dorien-er
Contributor
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5 of 10 tasks
Add
calculate_marker_genes component
#1168
opened Apr 22, 2026 by
lazappi
Contributor
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5 of 10 tasks
add metadata/copy_modality_slots component
#1166
opened Apr 17, 2026 by
jakubmajercik
Collaborator
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4 of 10 tasks
add filter/create_cell_masks component
#1165
opened Apr 17, 2026 by
jakubmajercik
Collaborator
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3 of 10 tasks
Add dataflow/move_anndata_slots component
#1163
opened Apr 14, 2026 by
jakubmajercik
Collaborator
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4 of 10 tasks
ingestion/cellranger_multi: avoid publishing duplicate Cell Ranger output
#1048
opened Jul 10, 2025 by
DriesSchaumont
Member
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4 of 10 tasks
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