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Copy file name to clipboardExpand all lines: CHANGELOG.md
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*`annotate/singler`: set `--input_layer` default to `log_normalized` and `--reference_var_input` default to `filter_with_hvg` to align with upstream workflow defaults (PR #1155).
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*`workflows/annotation/scanvi_scarches`: set `--input_obs_batch_label` and `--reference_obs_batch_label` defaults to `sample_id` and `--reference_var_hvg` default to `filter_with_hvg` to align with upstream workflow defaults (PR #1155).
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*`workflows/annotation/scanvi_scarches`: set `--input_obs_batch_label` and `--reference_obs_batch_label` defaults to `sample_id` and `--reference_var_hvg` default to `filter_with_hvg` to align with upstream workflow defaults (PR #1155, #1189).
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*`cluster/leiden`: added `flavor`, `n_iterations` and `seed` arguments (PR #1132)
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