Details of mean, variance etc. are not stored in .varm when flavor="seurat_v3". I think it is because this line checks for a "mean_bin" column which doesn't exist for that method.
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if par.get("varm_name", None) is not None and "mean_bin" in out: |
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# drop mean_bin as mudata/anndata doesn't support tuples |
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data.varm[par["varm_name"]] = out.drop("mean_bin", axis=1) |
Details of mean, variance etc. are not stored in
.varmwhenflavor="seurat_v3". I think it is because this line checks for a"mean_bin"column which doesn't exist for that method.openpipeline/src/feature_annotation/highly_variable_features_scanpy/script.py
Lines 218 to 220 in 1176e40