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jakubmajercik
requested changes
Jul 13, 2026
| include { parallel_subtyping } from params.rootDir + "/target/nextflow/single_cell/parallel_subtyping/main.nf" | ||
| // add_id is an openpipeline dependency; it builds into the version-pinned | ||
| // dependency cache rather than target/nextflow (tag set in _viash.yaml). | ||
| include { add_id } from params.rootDir + "/target/dependencies/vsh/vsh/openpipeline/v4.1.1/nextflow/metadata/add_id/main.nf" |
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Suggested change
| include { add_id } from params.rootDir + "/target/dependencies/vsh/vsh/openpipeline/v4.1.1/nextflow/metadata/add_id/main.nf" | |
| include { add_id } from params.rootDir + "/target/dependencies/vsh/vsh/openpipeline/v4.2.0/nextflow/metadata/add_id/main.nf" |
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Could you add another test case to cover --allow_missing_reference_cell_type?
jakubmajercik
approved these changes
Jul 14, 2026
Co-authored-by: Jakub Majercik <57993790+jakubmajercik@users.noreply.github.com>
jakubmajercik
approved these changes
Jul 14, 2026
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