Fix #260: add Locus.overlap_length helper#338
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Returns the number of overlapping base positions between two loci on the same contig/strand. Accepts ignore_strand=True for strand-invariant overlap. Returns 0 when loci are disjoint, on different contigs, or on opposite strands (unless ignore_strand=True). Bump version to 2.6.11.
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coverage: 83.702% (+0.05%) from 83.652% — fix-260-locus-overlap-length into main |
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Summary
Locus.overlap_length(other, ignore_strand=False)returning the number of overlapping base positions between two loci. Mirrors the contig/strand handling ofdistance_to_locusand returns 0 when the loci are disjoint, on different contigs, or on opposite strands.Closes #260.
Test plan
pytest tests/test_locus.py./lint.sh