Skip to content

@BSEL-UC3M Biomedical Sciences and Engineering Lab

Change the repository type filter

All

    Repositories list

    34 repositories

    • VFSS_analysis

      Public
      Repository to automatically preprocess a Videofluoroscopic Swallowing Study (VFSS), label it with a deep learning-based framework, and extract 21 dynamic parame…
      Python
      •1•1•0•0•Updated Apr 27, 2026Apr 27, 2026

    • OpenARHealth

      Public
      augmented-reality3d-printing
      augmented-reality3d-printing
      Python
      •
      Other
      •1•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • Workshop_3DSlicer-SOFA

      Public
      This GitHub repository complements the workshop 3D Slicer - SOFA organized at Universidad Carlos III de Madrid by the IGT group
      JavaScript
      •0•3•0•0•Updated Jul 15, 2025Jul 15, 2025

    • EHRatioAnalysis

      Public
      This repository contains a Python-based automated pipeline utilizing Deep Learning techniques to estimate Endolymphatic Hydrops (EH) ratios from 3D MRI sequence…
      Python
      •
      MIT License
      •0•4•1•0•Updated Jul 11, 2025Jul 11, 2025

    • DLUS

      Public
      GitHub repository for DLUS: Deep Learning-based Segmentation of Prostatic Urethra on Computed Tomography Scans for Treatment Planning
      Python
      •2•1•0•0•Updated Dec 17, 2024Dec 17, 2024

    • pMoSS

      Public
      pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the de…
      pythonstatisticsbig-data
      pythonstatisticsbig-datamonte-carlop-valuebiostatisticsdecayhypothesis-testingbioinformatics-analysismonte-carlo-sampling
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•16•0•0•Updated Mar 12, 2024Mar 12, 2024

    • CT-PKD-processing

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

    • PelvisAutomaticLandmarksDetection

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • HoloLens2and3DSlicer-PedicleScrewPlacementPlanning

      Public
      GitHub repository for the IJCARS paper: "Real-Time open-source integration between Microsoft HoloLens 2 and 3D Slicer"
      ShaderLab
      •
      BSD 3-Clause "New" or "Revised" License
      •15•41•4•0•Updated Dec 14, 2023Dec 14, 2023

    • FRU-Net-TEM-segmentation

      Public
      Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images
      deep-learningtensorflowkeras
      deep-learningtensorflowkerascircle-detectionsegmentationelectron-microscopyteminstance-segmentationradon-transformunet-keras
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Nov 10, 2023Nov 10, 2023

    • SmartGlovesConnection_Rokoko_Unity_3dSlicer

      Public
      Code from Cristina Soriano TFM. Sending information between Rokoko, Unity and 3D slicer.
      C#
      •0•0•0•0•Updated Sep 1, 2023Sep 1, 2023

    • UncertaintyEstimation

      Public
      Repository for storing the contents of the TFM regarding quantification and estimation of uncertainty in deep learning segmentation.
      Python
      •0•1•0•0•Updated Jul 27, 2023Jul 27, 2023

    • IGT-UltrARsound

      Public
      ShaderLab
      •
      Creative Commons Zero v1.0 Universal
      •3•8•0•0•Updated Jul 22, 2023Jul 22, 2023

    • Lap_sim

      Public
      Code organization of my TFM: laparoscopy simulator
      C#
      •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • ARinIORT

      Public
      0•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • SacralNerveStimulationSimulationOpen

      Public
      Sacral nerve stimulation simulation software
      Python
      •
      Other
      •0•1•1•0•Updated Feb 4, 2022Feb 4, 2022

    • ARHealthSmartphoneApp

      Public
      ARHealth Smartphone App
      0•1•0•0•Updated Jan 31, 2022Jan 31, 2022

    • TLS-Piped

      Public
      C++
      •0•0•0•0•Updated Sep 9, 2021Sep 9, 2021

    • Image-Segmentation-Evaluation

      Public
      Evaluating segmentation algorithms using SimpleITK filters
      Jupyter Notebook
      •2•0•0•0•Updated Aug 5, 2021Aug 5, 2021

    • Docker_image_pipeline

      Public
      Python
      •1•0•0•0•Updated Aug 5, 2021Aug 5, 2021

    • Thesis-template

      Public
      TeX
      •
      MIT License
      •3•0•0•0•Updated Feb 2, 2021Feb 2, 2021

    • IGT-AutomaticToolClassification

      Public
      Real-time classification of video streams using deep learning and 3D Slicer
      Jupyter Notebook
      •0•0•0•0•Updated Mar 18, 2020Mar 18, 2020

    • DeepLearningExamples

      Public
      Deep Learning Examples
      Python
      •3.4k•2•0•0•Updated Jul 15, 2019Jul 15, 2019

    • caffe-tensorflow

      Public
      Caffe models in TensorFlow
      Python
      •
      Other
      •1k•1•0•0•Updated Jan 17, 2019Jan 17, 2019

    • CT_System_Protocol_Optimization

      Public
      Matlab code to analyzed CT detector behaviour
      MATLAB
      •0•0•0•0•Updated Dec 19, 2018Dec 19, 2018

    • Semantic-Segmentation-Suite

      Public
      Semantic Segmentation Suite in TensorFlow. Implement, train, and test new Semantic Segmentation models easily!
      Python
      •868•0•0•0•Updated Dec 18, 2018Dec 18, 2018

    • MIDLLatexTemplate

      Public
      Latex template for the MIDL Conference
      TeX
      •104•0•0•0•Updated Oct 11, 2018Oct 11, 2018

    • MMITB

      Public
      Multi Modality Imaging Tuberculosis
      Python
      •0•0•0•0•Updated Feb 23, 2018Feb 23, 2018

    • PET_Tumor_Analysis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 21, 2017Jul 21, 2017

    • Charla_Git

      Public
      Python
      •0•0•0•0•Updated May 3, 2017May 3, 2017
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.