Skip to content

@CCRSF-IFX CCRSF-IFX

Change the repository type filter

All

    Repositories list

    17 repositories

    • SF_sc-smk-wl

      Public
      HTML
      •0•0•0•0•Updated Mar 27, 2026Mar 27, 2026

    • SF_biocontainer

      Public
      Dockerfile
      •1•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • methXsort

      Public
      methXsort: Sorting Bisulfite- or Enzymatic-converted Reads in Xenograft Experiments
      Python
      •0•0•0•0•Updated Mar 4, 2026Mar 4, 2026

    • scRNA_pipeline

      Public
      Single Cell RNA-seq Analysis Pipeline
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • NGS_SV_CNV_Pipeline

      Public
      Genome Structural Variants Detection and Annotation Pipeline. Functions include NGS data QC, both germline and somatic SVs and CNVs detections, SVs and CNVs ann…
      Python
      •
      MIT License
      •2•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • scMaestro

      Public
      scMaestro: end-to-end single-cell data analysis workflow with Snakemake and Singularity.
      Python
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • SF_LR_scRNA

      Public
      R
      •1•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • SF_Downstream_RNA-seq

      Public
      RNA-Seq Downstream Differential Gene Expression and Gene Set Enrichment Analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • SF_LR_VAP

      Public
      SF Long Read Variant Analysis pipeline
      Python
      •
      MIT License
      •1•1•0•0•Updated May 13, 2024May 13, 2024

    • SF_LR_Transcriptome

      Public
      Long read transcriptome pipeline for Pacbio and ONT
      Python
      •
      MIT License
      •1•0•0•0•Updated May 13, 2024May 13, 2024

    • SF_Fastq-QC

      Public
      Fastq QC pipeline for fast project delivery, also called "nopipe".
      Python
      •
      MIT License
      •1•0•0•0•Updated May 1, 2024May 1, 2024

    • SF_Polylox-BC

      Public
      Repository for Polylox barcoding extraction scripts
      Python
      •
      MIT License
      •1•2•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_LR_SOMATIC

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_MAS-SC

      Public
      Python
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_miRNA

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • SF_ATAC-seq

      Public
      Python
      •1•0•0•0•Updated Apr 26, 2024Apr 26, 2024

    • NGS_Preprocessing_Pipeline

      Public
      NGS Pipelines for Preprocessing RNA-seq, Whole Genome Sequencing and Exome-seq, and miRNA-Seq Data
      Python
      •
      BSD 2-Clause "Simplified" License
      •3•0•0•0•Updated May 22, 2021May 22, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.