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62 repositories

.github
Public
0•0•0•0•Updated Jun 8, 2026Jun 8, 2026
metatranscriptomics
Public
HTML
•0•1•0•0•Updated Jun 1, 2026Jun 1, 2026
nerc-metagenomics-v2q
Public
NERC Metagenomics (Quarto-based Version 2 + Bash automation)
CSS
•0•0•0•0•Updated Aug 21, 2025Aug 21, 2025
metagenomics00-overview
Public
Metagenomics course overview
Python
•
Other
•0•0•2•0•Updated Dec 2, 2024Dec 2, 2024
aws-instances
Public
Scripts for managing multiple AWS instances and some data examples: gc_run01_data and gc_run02_data
Shell
•
MIT License
•0•0•0•0•Updated Nov 11, 2024Nov 11, 2024
cloud-admin-guide-v2q
Public
CSS
•0•0•0•0•Updated Nov 11, 2024Nov 11, 2024
cloud-span-quarto-site
Public
CSS
•0•0•0•0•Updated Sep 25, 2024Sep 25, 2024
CloudSPAN-handbook
Public
CloudSPAN Handbook
HTML
•1•3•0•0•Updated Aug 21, 2024Aug 21, 2024
cloud-span-graphics
Public
0•0•0•0•Updated Aug 21, 2024Aug 21, 2024
core-r
Public
JavaScript
•0•0•0•0•Updated Apr 25, 2024Apr 25, 2024
00genomics
Public
Genomics Course Introduction
training-materials genomic-data-analysis educational-resources
training-materials genomic-data-analysis educational-resources
Python
•
Other
•0•0•0•0•Updated Apr 9, 2024Apr 9, 2024
experimental_design02-case-study
Public
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
experimental_design01-principles
Public
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
experimental_design00-overview
Public
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics06-taxonomic-anno
Public
NERC Metagenomics Taxonomic Annotations
HTML
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics05-binning
Public
NERC Metagenomics Binning
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics04-polishing
Public
NERC Metagenomics Polishing
HTML
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics03-qc-assembly
Public
NERC Metagenomics QC Assembly
HTML
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics02-command-line
Public
NERC Metagenomics Command Line
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics01-file-directories
Public
NERC Metagenomics File Directories
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
nerc-metagenomics00-overview
Public
NERC Metagenomics Overview
Python
•
Other
•0•0•0•0•Updated Mar 18, 2024Mar 18, 2024
cloud-admin-guide-1-setting-work-environments
Public
Cloud Admin Guide course - lesson Setting Work Environments
cloud-resources bash-scripts aws-ec2-intances
cloud-resources bash-scripts aws-ec2-intances automated-managment
Python
•
Other
•0•0•0•0•Updated Jan 28, 2024Jan 28, 2024
cloud-admin-guide-0-overview
Public
Cloud Admin Guide course overview
cloud-resources bash-scripts aws-ec2-intances
cloud-resources bash-scripts aws-ec2-intances automated-managment
Python
•
Other
•0•0•2•0•Updated Jan 28, 2024Jan 28, 2024
cloud-admin-guide-2-managing-aws-instances
Public
Cloud Admin Guide course - lesson Managing AWS Instances
cloud-resources bash-scripts aws-ec2-intances
cloud-resources bash-scripts aws-ec2-intances automated-managment
Python
•
Other
•0•0•0•0•Updated Jan 28, 2024Jan 28, 2024
04genomics
Public
Finding sequence variants
Python
•
Other
•1•0•0•0•Updated Jan 24, 2024Jan 24, 2024
03genomics
Public
Assessing read quality then trimming and filtering reads
Python
•
Other
•0•0•0•0•Updated Jan 8, 2024Jan 8, 2024
02genomics
Public
Data preparation and organisation
bioinformatics training-materials data-preparation
bioinformatics training-materials data-preparation command-line-interface genomic-data-analysis educational-resources project-organisation
Python
•
Other
•0•0•0•0•Updated Jan 8, 2024Jan 8, 2024
01genomics
Public
Project management for cloud genomics
training-materials command-line-interface genomic-data-analysis
training-materials command-line-interface genomic-data-analysis educational-resources
Python
•
Other
•0•0•0•0•Updated Jan 8, 2024Jan 8, 2024
metagenomics01-qc-assembly
Public
Metagenomics QC and Assembly lesson
HTML
•
Other
•0•0•0•0•Updated Sep 4, 2023Sep 4, 2023
create-aws-instance-1-open-account
Public
Lesson 1 Open your AWS account.
Python
•
Other
•0•0•1•0•Updated Jun 26, 2023Jun 26, 2023

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62 repositories

.github

metatranscriptomics

nerc-metagenomics-v2q

metagenomics00-overview

aws-instances

cloud-admin-guide-v2q

cloud-span-quarto-site

CloudSPAN-handbook

cloud-span-graphics

core-r

00genomics

experimental_design02-case-study

experimental_design01-principles

experimental_design00-overview

nerc-metagenomics06-taxonomic-anno

nerc-metagenomics05-binning

nerc-metagenomics04-polishing

nerc-metagenomics03-qc-assembly

nerc-metagenomics02-command-line

nerc-metagenomics01-file-directories

nerc-metagenomics00-overview

cloud-admin-guide-1-setting-work-environments

cloud-admin-guide-0-overview

cloud-admin-guide-2-managing-aws-instances

04genomics

03genomics

02genomics

01genomics

metagenomics01-qc-assembly

create-aws-instance-1-open-account

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62 repositories