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@CutaneousBioinf Cutaneous Bioinformatics at University of Michigan Dermatology

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    21 repositories

    • single-cell_pipeline

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • QuantaBot

      Public
      UROP2024-Dongeun Kim
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 8, 2026Feb 8, 2026

    • PheWeb-Beta-Matrix-Builder

      Public
      Crawls GWAS summary stats for many phenotypes from PheWeb site and builds relevant matrix.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 14, 2025Dec 14, 2025

    • Multi-context-TWAS

      Public
      R
      •0•1•0•0•Updated Dec 10, 2025Dec 10, 2025

    • Automatic-Cell-Typing

      Public
      An automatic cell type identification pipeline for spatial transcriptomics(CosMx and Xenium).
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 14, 2025Nov 14, 2025

    • CellSegmentation

      Public
      Python
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • Loopsim

      Public
      Enrichment Analysis of Chromosome Conformation Capture with Fast Empirical Distribution Simulation
      Python
      •
      MIT License
      •0•2•0•0•Updated Jul 20, 2025Jul 20, 2025

    • JDM_skin_RNAseq

      Public
      R
      •0•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • PN_microbiome_analysis

      Public
      R
      •0•0•0•0•Updated Jul 29, 2024Jul 29, 2024

    • GenomicAnalysis

      Public
      Python
      •2•1•0•0•Updated Apr 11, 2024Apr 11, 2024

    • GTF

      Public
      C++
      •1•1•0•0•Updated Feb 28, 2024Feb 28, 2024

    • Genetics

      Public
      C++
      •0•2•0•0•Updated Sep 6, 2022Sep 6, 2022

    • SNP2HLA_UM

      Public
      Fortran
      •0•1•2•0•Updated Aug 24, 2022Aug 24, 2022

    • DrugPrediction

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 6, 2022Apr 6, 2022

    • RareDiseaseAnalysis

      Public
      Shell
      •0•0•0•0•Updated Mar 17, 2022Mar 17, 2022

    • Gene_Simulation

      Public
      HTML
      •0•0•0•0•Updated Dec 14, 2020Dec 14, 2020

    • Expression

      Public
      R
      •0•0•0•0•Updated Oct 7, 2020Oct 7, 2020

    • Integration-for-scRNA-seq-bulk-RNA-seq-data

      Public
      R
      •0•0•0•0•Updated Sep 15, 2020Sep 15, 2020

    • LiteratureMiningTool

      Public
      Prolog
      •1•1•0•0•Updated Aug 28, 2020Aug 28, 2020

    • Skin-specific-Co-expression

      Public
      R
      •0•0•0•0•Updated Aug 12, 2020Aug 12, 2020

    • ATAC-seq

      Public
      Python
      •0•0•0•0•Updated Nov 26, 2018Nov 26, 2018
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