Cutaneous Bioinformatics at University of Michigan Dermatology

All

21 repositories

QuantaBot
Public
UROP2024-Dongeun Kim
Python
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Apache License 2.0
•1•0•0•0•Updated Feb 8, 2026Feb 8, 2026
PheWeb-Beta-Matrix-Builder
Public
Crawls GWAS summary stats for many phenotypes from PheWeb site and builds relevant matrix.
Python
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Apache License 2.0
•1•0•0•0•Updated Dec 14, 2025Dec 14, 2025
Multi-context-TWAS
Public
R
•0•1•0•0•Updated Dec 10, 2025Dec 10, 2025
Automatic-Cell-Typing
Public
An automatic cell type identification pipeline for spatial transcriptomics(CosMx and Xenium).
R
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Apache License 2.0
•0•0•0•0•Updated Nov 14, 2025Nov 14, 2025
CellSegmentation
Public
Python
•0•0•0•0•Updated Oct 24, 2025Oct 24, 2025
Loopsim
Public
Enrichment Analysis of Chromosome Conformation Capture with Fast Empirical Distribution Simulation
Python
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MIT License
•0•2•0•0•Updated Jul 20, 2025Jul 20, 2025
single-cell_pipeline
Public
Python
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MIT License
•0•0•0•0•Updated Feb 13, 2025Feb 13, 2025
JDM_skin_RNAseq
Public
R
•0•1•0•0•Updated Nov 14, 2024Nov 14, 2024
PN_microbiome_analysis
Public
R
•0•0•0•0•Updated Jul 29, 2024Jul 29, 2024
GenomicAnalysis
Public
Python
•2•1•0•0•Updated Apr 11, 2024Apr 11, 2024
GTF
Public
C++
•1•1•0•0•Updated Feb 28, 2024Feb 28, 2024
Genetics
Public
C++
•0•2•0•0•Updated Sep 6, 2022Sep 6, 2022
SNP2HLA_UM
Public
Fortran
•0•1•2•0•Updated Aug 24, 2022Aug 24, 2022
DrugPrediction
Public
Jupyter Notebook
•0•0•0•0•Updated Apr 6, 2022Apr 6, 2022
RareDiseaseAnalysis
Public
Shell
•0•0•0•0•Updated Mar 17, 2022Mar 17, 2022
Gene_Simulation
Public
HTML
•0•0•0•0•Updated Dec 14, 2020Dec 14, 2020
Expression
Public
R
•0•0•0•0•Updated Oct 7, 2020Oct 7, 2020
Integration-for-scRNA-seq-bulk-RNA-seq-data
Public
R
•0•0•0•0•Updated Sep 15, 2020Sep 15, 2020
LiteratureMiningTool
Public
Prolog
•1•1•0•0•Updated Aug 28, 2020Aug 28, 2020
Skin-specific-Co-expression
Public
R
•0•0•0•0•Updated Aug 12, 2020Aug 12, 2020
ATAC-seq
Public
Python
•0•0•0•0•Updated Nov 26, 2018Nov 26, 2018