Genomics Aotearoa
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76 repositories
- Material for bioinformatics training programme website
visualization_day
PublicVisualisation is more than just the code used to make a plot.Intermediate-R
PublicIntermediate R workshop materialIntroduction-to-R
PublicIntroduction to R- A workflow for analysing RNA-seq data, aimed at new users who want to understand the methods available.
introduction-to-shell
Publicintroduction to shellNextflow_Workshop
PublicA workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.shell-for-bioinformatics
PublicIntermediate-Advanced shell for Bioinformatics- A workshop to get you started with automating your genomic data analysis work in a High Performance Computing environment
genomics-mini-series
Public- A two day workshop on reproducibility with Git and Quarto
High-quality-genomes
PublicThis repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.- Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.
- Code and files for Genomics Aotearoa github.io website. **Now deprecated**
.github
PublicHoiho
Publichts_workshop_mpi
PublicTraining materials for the 2025 HTS Plant Health and Environment Laboratory workshopHPGP-basics
Public- Training workshop for microbial genome assembly using short sequencing reads.
nesi-jupyter
Public- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
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