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    21 repositories

    • toulligQC

      Public
      A post sequencing QC tool for Oxford Nanopore sequencers
      JavaScript
      •
      Other
      •11•109•5•1•Updated Mar 11, 2026Mar 11, 2026

    • wf-toulligqc

      Public
      Groovy
      •
      Other
      •4•8•1•0•Updated Mar 5, 2026Mar 5, 2026

    • eoulsan

      Public
      A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
      javarna-seqanalysis
      javarna-seqanalysisworkflow-enginebioinformatics-pipelinecloud-computing-clusters
      Java
      •
      Other
      •11•55•0•7•Updated Mar 1, 2026Mar 1, 2026

    • kenetre

      Public
      Java
      •
      Other
      •1•0•0•1•Updated Feb 25, 2026Feb 25, 2026

    • easy-contrasts-DESeq2

      Public
      HTML
      •
      GNU Lesser General Public License v2.1
      •4•8•0•0•Updated Feb 10, 2026Feb 10, 2026

    • egzotek

      Public
      A transcript annotation for incomplete or poorly annotated genomes using nanopore reads
      bioinformatics-pipelinenextflow-pipeline
      bioinformatics-pipelinenextflow-pipeline
      Nextflow
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Sep 23, 2025Sep 23, 2025

    • aozan

      Public
      An automated post sequencing data processing pipeline for Illumina HiSeq
      HTML
      •
      Other
      •4•14•3•11•Updated Aug 28, 2025Aug 28, 2025

    • AsaruSim

      Public
      10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/
      simulatornanoporenextflow
      simulatornanoporenextflowsingle-celllongreadsplicing
      Python
      •
      GNU General Public License v3.0
      •2•13•0•0•Updated Jul 27, 2025Jul 27, 2025

    • eoulsan-tools

      Public
      Additional formats and Galaxy tool files for Eoulsan
      Apache License 2.0
      •2•2•0•0•Updated Jul 2, 2024Jul 2, 2024

    • formationONT

      Public
      HTML
      •1•2•0•0•Updated May 30, 2024May 30, 2024

    • nf-workflows

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • snuupy

      Public
      single-nucleus nanopore reads processing pipeline
      Python
      •6•0•0•0•Updated Jun 20, 2022Jun 20, 2022

    • dockerfiles

      Public
      Dockerfile
      •23•82•0•0•Updated Feb 22, 2022Feb 22, 2022

    • toullig

      Public
      Java
      •
      Other
      •0•1•0•0•Updated Sep 11, 2018Sep 11, 2018

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.8k•0•0•0•Updated Nov 27, 2017Nov 27, 2017

    • ValidAnnot

      Public
      Python
      •0•0•0•0•Updated May 16, 2017May 16, 2017

    • riboproanalysis

      Public
      Shell
      •2•3•0•0•Updated Aug 18, 2016Aug 18, 2016

    • nividic

      Public
      A microarray toolkit
      Java
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Mar 19, 2015Mar 19, 2015

    • doelan

      Public
      An automated tool to check the quality of produced DNA microarrays
      Java
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Mar 19, 2015Mar 19, 2015

    • corsen

      Public
      Corsen is a tool dedicated to 3D distances measurements developed to access the minimal distance between cellular objects
      Java
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Mar 19, 2015Mar 19, 2015

    • teolenn

      Public
      A high-quality prode design workflow for microarrays
      Java
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Mar 19, 2015Mar 19, 2015