Cancer Immune Recognition Lab

All

25 repositories

MixMHCpred
Public
HLA-I ligand predictor
Python
•
Other
•10•44•1•1•Updated Mar 19, 2026Mar 19, 2026
SuperCell
Public
Coarse-graining of large single-cell RNA-seq data into metacells
r-package scrna-seq-data coarse-graining
r-package scrna-seq-data coarse-graining scrna-seq-analysis
R
•
GNU General Public License v3.0
•15•98•3•2•Updated Feb 23, 2026Feb 23, 2026
SuperCellMultiomicsHTAN
Public
R
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
SuperCellMultiomicsAnalyses
Public
Analysis of single-cell multiomics datasets using metacell tools
MIT License
•0•0•0•0•Updated Feb 12, 2026Feb 12, 2026
TANs_ATACseq_analyses
Public
R
•0•0•0•0•Updated Feb 9, 2026Feb 9, 2026
MixTCRclean
Public
Tool to detect putative issues in TCR sequences data
R
•
Other
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
TEMPO
Public
TCR-epitope motif-based interaction predictor
Other
•0•1•1•0•Updated Nov 13, 2025Nov 13, 2025
SuperSpot
Public
HTML
•0•3•1•0•Updated Nov 6, 2025Nov 6, 2025
MixTCRcross
Public
Predictor of TCR cross-reactivity between a pair of epitopes
R
•
Other
•0•0•0•0•Updated Oct 9, 2025Oct 9, 2025
PRIME
Public
PRedictor of IMmunogenic Epitopes
C++
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Other
•4•29•0•0•Updated Sep 24, 2025Sep 24, 2025
MixTCRpred
Public
Predictor of TCR-epitope interactions
Python
•
Other
•10•34•1•0•Updated Sep 9, 2025Sep 9, 2025
ggseqlogo
Public
Publication-quality sequence logos in R
R
•32•1•0•0•Updated Feb 20, 2025Feb 20, 2025
MoDec
Public
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
mhc hla deconvolution
mhc hla deconvolution
R
•
Other
•1•15•0•0•Updated Feb 17, 2025Feb 17, 2025
EPIC-ATAC_manuscript
Public
Code used for the analyses performed in the EPIC-ATAC manuscript
R
•
Other
•0•3•0•0•Updated Oct 8, 2024Oct 8, 2024
EPIC-ATAC
Public
R
•
Other
•0•1•0•0•Updated Oct 1, 2024Oct 1, 2024
MetacellAnalysisToolkit
Public
Toolkit for metacell analysis
R
•5•23•3•0•Updated Aug 8, 2024Aug 8, 2024
MetacellAnalysisTutorial
Public
Tutorial on construction and analysis of metacells
TeX
•0•9•0•0•Updated Mar 7, 2024Mar 7, 2024
MixMHCp
Public
Tool for motif deconvolution in large HLA-I ligand datasets
R
•
Other
•2•10•0•0•Updated Oct 6, 2023Oct 6, 2023
EPIC
Public
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
rna-seq gene-expression bulk-data
rna-seq gene-expression bulk-data cell-type cancer-cells
R
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Other
•22•85•0•0•Updated Jul 12, 2023Jul 12, 2023
MixMHC2pred
Public
HLA-II ligand predictor.
t-cell hla mhc-binding-prediction
t-cell hla mhc-binding-prediction
C++
•
Other
•11•46•1•0•Updated Apr 6, 2023Apr 6, 2023
SIB_workshop
Public
Jupyter Notebook
•0•5•0•0•Updated Jun 15, 2022Jun 15, 2022
PLDpred
Public
Predictions of peptide length distribution for HLA-I molecules
R
•0•1•0•0•Updated Oct 1, 2020Oct 1, 2020
PhosMHCpred
Public
Predictor of Phosphorylated HLA-I ligands
Python
•2•5•0•0•Updated Jun 30, 2020Jun 30, 2020
MHCpExt
Public
Identification of N- and C-terminal extensions in HLA-I ligands
Perl
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Other
•2•2•0•0•Updated May 4, 2018May 4, 2018
DCApeptides
Public
Extension of Direct Coupling Analysis to consider multiple ligands
C++
•0•0•0•0•Updated Aug 25, 2017Aug 25, 2017