Repositories list

• CellTypeMeanField

  Public
  This repository contains code and data for the study "Inhibitory cell type heterogeneity in a spatially structured mean-field model of V1" by Kim and Choi (https://doi.org/10.1101/2025.03.13.643046).

  Jupyter Notebook

  •0•0•0•0•Updated Nov 4, 2025Nov 4, 2025

• corticalRNN

  Public
  Exploring the architectural biases of the canonical cortical microcircuit

  Jupyter Notebook

  •1•0•0•0•Updated Sep 8, 2025Sep 8, 2025

• RetrogradeNetworkAnalysis

  Public
  Python

  •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• cortical_circuit_model_for_novelty_encoding

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

• biologicalRNNs

  Public
  Biologically constrained RNNs via Dale's backprop and topologically-informed pruning

  Jupyter Notebook

  •

  MIT License

  •2•1•0•0•Updated Jun 9, 2025Jun 9, 2025

• CTCImageReconstruction

  Public
  Jupyter Notebook

  •3•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• CellTypeCircuit

  Public
  Jupyter Notebook

  •3•1•0•1•Updated Feb 21, 2025Feb 21, 2025

• functional-network

  Public
  Python Implementation of "Stimulus type shapes the topology of cellular functional networks in mouse visual cortex"

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •3•4•0•0•Updated Aug 29, 2024Aug 29, 2024

• SpikeCoding

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• active-sensing-paper

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 2, 2024Mar 2, 2024

• bayesian-synapse-rnn

  Public
  Implementation and exploration of the RNN introduced in (Aitchison, 2021)

  Python

  •0•0•0•0•Updated Dec 28, 2023Dec 28, 2023