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@HUPO-PSI HUPO Proteomics Standards Initiative

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    32 repositories

    • mzPeak

      Public
      Rust
      •3•18•5•0•Updated Feb 21, 2026Feb 21, 2026

    • mzPeak.NET

      Public
      A .NET implementation of mzPeak
      C#
      •0•0•0•0•Updated Feb 21, 2026Feb 21, 2026

    • psi-ms-CV

      Public
      HUPO-PSI mass spectrometry CV
      mass-spectrometryobofoundry
      Python
      •
      Other
      •44•40•7•2•Updated Feb 20, 2026Feb 20, 2026

    • xlmod-CV

      Public
      Repo for the XLMOD ontology for chemical cross linkers
      XSLT
      •
      Apache License 2.0
      •3•1•0•2•Updated Feb 20, 2026Feb 20, 2026

    • psi-ai.org

      Public
      Community-driven website of the AI-readiness working group. Feel free to contribute!
      TeX
      •0•0•0•0•Updated Feb 17, 2026Feb 17, 2026

    • mzTab-M

      Public
      Development of the mzTab-M standard data form
      CSS
      •
      Creative Commons Attribution 4.0 International
      •5•5•35•4•Updated Feb 17, 2026Feb 17, 2026

    • psi-mi-CV

      Public
      Molecular Interactions Controll Vocabulary
      Creative Commons Attribution 4.0 International
      •4•4•14•0•Updated Jan 26, 2026Jan 26, 2026

    • mzIdentML

      Public
      Repository for mzIdentML and the corresponding examples
      HTML
      •24•26•16•2•Updated Jan 16, 2026Jan 16, 2026

    • psi-mod-browser

      Public
      A lightweight Vue 3 web application for browsing and searching the PSI-MOD controlled vocabulary of protein residue modifications with filtering, cross-referenc…
      Vue
      •
      Apache License 2.0
      •0•1•0•1•Updated Jan 16, 2026Jan 16, 2026

    • psi-mod-CV

      Public
      PSI-MOD ontology for modified and unmodified amino acid residues
      proteomicsmass-spectrometryptmamino-acidsmodificationshupo-psiobofoundrypost-translational-modificationcontrolled-vocabulary
      Python
      •
      Creative Commons Attribution 4.0 International
      •15•14•22•2•Updated Jan 8, 2026Jan 8, 2026

    • miTab

      Public
      Molecular Interactions Tab-delimited format
      0•4•0•0•Updated Jan 7, 2026Jan 7, 2026

    • mzQC

      Public
      Reporting and exchange format for mass spectrometry quality control data
      quality-controlmetricsmass-spectrometry
      Dockerfile
      •
      Creative Commons Attribution 4.0 International
      •15•32•25•3•Updated Dec 12, 2025Dec 12, 2025

    • psi-tools

      Public
      Previous https://sourceforge.net/p/psidev/svn/HEAD/tree/psi/tools/ folder
      Java
      •2•2•1•0•Updated Nov 18, 2025Nov 18, 2025

    • ProForma

      Public
      HUPO-PSI Standardized peptidoform notation
      standardsproteomicsmass-spectrometrypeptidoform
      Rust
      •5•23•2•1•Updated Nov 14, 2025Nov 14, 2025

    • mzSpecLib

      Public
      mzSpecLib: A standard format to exchange/distribute spectral libraries
      standardsfile-formatproteomicsmass-spectrometryhupo-psispectral-library
      Python
      •
      Apache License 2.0
      •14•30•4•4•Updated Oct 31, 2025Oct 31, 2025

    • usi

      Public
      Universal Spectrum Identifier for Mass Spectrometry
      Apache License 2.0
      •3•6•4•0•Updated Sep 19, 2025Sep 19, 2025

    • mzPAF

      Public
      mzPAF Peak Annotation Format
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •4•3•1•1•Updated Sep 5, 2025Sep 5, 2025

    • hupo-psi.org

      Public
      Simple HTTP redirect page from hupo-psi.org to psidev.info
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

    • mzspeclib-py

      Public
      A python reference implementation of the mzSpecLib spectral library format
      Python
      •
      Apache License 2.0
      •2•6•1•0•Updated Jul 11, 2025Jul 11, 2025

    • mzTab

      Public
      mzTab Reporting MS-based Proteomics and Metabolomics Results
      Java
      •19•45•11•8•Updated Apr 1, 2025Apr 1, 2025

    • hupo-psi.github.io

      Public
      Landing site for GitHub Pages
      Apache License 2.0
      •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

    • mzML

      Public
      Repository for mzML and the corresponding examples
      Java
      •16•34•3•1•Updated Apr 5, 2024Apr 5, 2024

    • MIAPE

      Public
      A repository of MIAPE documents and examples
      Apache License 2.0
      •0•1•0•0•Updated Jan 16, 2024Jan 16, 2024

    • psi-doc-proc

      Public
      0•0•0•0•Updated Jul 12, 2023Jul 12, 2023

    • proxi-schemas

      Public
      ProXI: Schema definitions for the Proteomics eXpression Interface
      apiswaggerschemasproteomicsproteomics-dataproteomexchange
      JavaScript
      •3•4•24•1•Updated Apr 17, 2023Apr 17, 2023

    • mzidentml-validator

      Public
      mzidentml validator ui and command line tool
      Java
      •
      Apache License 2.0
      •0•0•10•0•Updated Oct 7, 2022Oct 7, 2022

    • PEFF

      Public
      Repository for the PSI Extended FASTA Format
      Apache License 2.0
      •2•7•13•0•Updated Apr 5, 2021Apr 5, 2021

    • glycopeptides_in_mzidentml

      Public
      Effort to extend support for encoding glycopeptides in mxIdentML
      0•1•0•0•Updated Mar 28, 2021Mar 28, 2021

    • miXML

      Public
      Molecular Interaction XML Format
      HTML
      •3•6•0•0•Updated Mar 1, 2021Mar 1, 2021

    • gelml

      Public
      PSI standard for Gel experiments
      the
      HTML
      •3•2•1•1•Updated Dec 15, 2018Dec 15, 2018