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    29 repositories

    • JABS-behavior-classifier

      Public
      Behavior Classifier Component from the Jax Animal Behavior System
      Python
      •
      Other
      •5•23•7•6•Updated Mar 22, 2026Mar 22, 2026

    • B6JDO-KPMS-Pipeline

      Public
      Keypoint-MoSeq (KPMS) training pipeline for B6J/DO video data. Used in the Unsupervised-vFI manuscript.
      Python
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • mouse-tracking-runtime

      Public
      Runtime environment for Kumar Lab trained mouse tracking models
      Python
      •
      Other
      •0•1•6•3•Updated Feb 18, 2026Feb 18, 2026

    • JABS-postprocess

      Public
      Resources to assist with interacting with JABS classifier predictions
      Python
      •
      Other
      •0•1•5•4•Updated Jan 21, 2026Jan 21, 2026

    • Migraine

      Public
      Scripts for generating results for the migraine project.
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • JABS_nextflow_postprocess

      Public
      R
      •1•0•0•1•Updated Jan 5, 2026Jan 5, 2026

    • Lepr_dax3

      Public
      Analysis of Lepr mice in Envision DAX3
      0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • ptz-seizure-supervised

      Public
      Data and scripts for reproducing results in the seizure manuscript
      R
      •
      Other
      •0•0•0•0•Updated Oct 23, 2025Oct 23, 2025

    • NextFlow_NTGDataAnalysisApp_v0.2

      Public
      An app to alalyze the nitroglycerin data from Nextflow
      R
      •
      MIT License
      •1•0•0•1•Updated Sep 30, 2025Sep 30, 2025

    • JABS-data-pipeline

      Public
      General overview of JABS, including hardware, wiki, and links to associated software components
      Other
      •1•4•1•0•Updated Sep 15, 2025Sep 15, 2025

    • vFI-features

      Public
      Code for running features for the visual FI model
      Python
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • DO-vFI-modeling

      Public
      R
      •
      Other
      •0•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • MouseSleep

      Public
      Sleep state prediction for mice and rodents.
      Python
      •
      MIT License
      •1•1•2•0•Updated Jun 4, 2024Jun 4, 2024

    • visual-mouse-weight

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated May 2, 2024May 2, 2024

    • KOMP2022

      Public
      R
      •0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • QTL_analysis_for_Crichton

      Public
      R
      •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

    • JABS-device-client

      Public
      C++
      •
      Other
      •0•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • JABS-recording-ui

      Public
      TypeScript
      •
      Other
      •0•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • JABS-recording-control-server

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Mar 1, 2023Mar 1, 2023

    • gaitanalysis

      Public
      Perform gait analysis on pose estimation files.
      Python
      •
      MIT License
      •4•2•1•0•Updated Jan 24, 2023Jan 24, 2023

    • vFI-modeling

      Public
      R
      •0•1•1•0•Updated Oct 26, 2022Oct 26, 2022

    • LimeLightFrameRate

      Public
      Compare LimeLight Frame Rates
      0•0•0•0•Updated Jan 19, 2022Jan 19, 2022

    • social-interaction-heuristics

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2021Dec 20, 2021

    • deep-hrnet-mouse

      Public
      Python
      •
      MIT License
      •1•9•3•0•Updated Oct 15, 2021Oct 15, 2021

    • MouseGrooming

      Public
      Mouse grooming neural network training and inference code for single mice in open field assays.
      Python
      •
      MIT License
      •0•10•2•0•Updated Mar 29, 2021Mar 29, 2021

    • MouseTrackingExtras

      Public
      Annotator, docker instance for annotator, and data csv exporter for mouse tracking
      C++
      •
      MIT License
      •1•0•0•0•Updated Feb 18, 2019Feb 18, 2019

    • MouseTracking

      Public
      Neural network tracking code applied to single mice in open fields assays.
      Python
      •
      MIT License
      •5•10•2•0•Updated Feb 14, 2019Feb 14, 2019

    • IMPC-Data-Analysis

      Public
      Analysis of KOMP data through the IMPC pipeline
      R
      •0•0•0•0•Updated Nov 13, 2017Nov 13, 2017

    • CtraxBackgroundExtractor

      Public
      Extracts the background image binary from Ctrax's annotation file.
      Python
      •0•1•0•0•Updated Sep 10, 2016Sep 10, 2016