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@LBGC-CFB Laboratoire de Biologie et de Génétique du Cancer - Centre François Baclesse

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    5 repositories

    • MAGIC

      Public
      Minigene Assembly and Generation of Isoform Combinations pipeline
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jun 3, 2025Jun 3, 2025

    • SpliceLauncher

      Public
      RNAseq pipeline for alternative splicing junctions
      rnaseqstarbedtoolssamtoolsgffgenome-fastaalternative-junctions
      R
      •
      MIT License
      •10•13•5•0•Updated Apr 23, 2025Apr 23, 2025

    • SOSTAR

      Public
      iSofOrmS annoTAtoR pipeline Aucouturier, C., Soirat, N., Castéra, L. et al. Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline. BMC Genomics 25, 909 (2024).
      longreadrnaseq-pipeline
      Python
      •
      GNU General Public License v3.0
      •0•5•1•0•Updated Jan 19, 2025Jan 19, 2025

    • SPiP

      Public
      Splicing Prediction Pipeline
      splicingvcfspip
      R
      •
      MIT License
      •6•15•4•1•Updated Aug 12, 2023Aug 12, 2023

    • outLyzer

      Public
      An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
      Python
      •6•0•0•0•Updated Jun 5, 2023Jun 5, 2023