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    148 repositories

    • lennonlab.github.io

      Public
      HTML
      •0•0•0•0•Updated Mar 22, 2026Mar 22, 2026

    • MetabolicDistribution

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • deep.oxygen

      Public
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 2, 2026Feb 2, 2026

    • SporeLifestyle

      Public
      R
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Jan 30, 2026Jan 30, 2026

    • danger.signal

      Public
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 26, 2026Jan 26, 2026

    • cost_of_spore

      Public
      Here we quantified the energetic cost of sporulation in units of ATP by integrating time-resolved genome, transcriptome, and proteome profiles. We incorporated …
      R
      •
      MIT License
      •3•1•0•0•Updated Jan 21, 2026Jan 21, 2026

    • VirosporeQuant

      Public
      2•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • metabolake

      Public
      metabolic distribtuion of plankton
      R
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • lennonlab-original.github.io

      Public archive
      lennon lab website
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•2•Updated Dec 30, 2025Dec 30, 2025

    • Gut

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • rhizo.rb.tnseq

      Public
      HTML
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • division.labor

      Public
      HTML
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • TemperateMOI

      Public
      0•0•0•0•Updated Nov 24, 2025Nov 24, 2025

    • residence-time-metagenomics

      Public
      GNU General Public License v3.0
      •1•0•0•0•Updated Nov 8, 2025Nov 8, 2025

    • cv

      Public
      TeX
      •0•0•0•0•Updated Sep 17, 2025Sep 17, 2025

    • paleophage

      Public
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • astrodorm

      Public
      R
      •
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Aug 8, 2025Aug 8, 2025

    • ASG-fitness-effects

      Public
      Code for "Effects of auxiliary sporulation genes on fitness" project
      R
      •1•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • SporGermDB

      Public
      Identifies sporulation and germination genes on Uniprot and creates a reference database for lab use
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • Auxiliary-Germination-Genes

      Public
      Repo for all things related to host germination genes found in viral genomes
      2•0•0•1•Updated Jun 16, 2025Jun 16, 2025

    • evolution-canyon

      Public
      R
      •3•0•0•0•Updated May 13, 2025May 13, 2025

    • SporeMut

      Public
      mutation accumulation in dormancy
      R
      •2•0•0•0•Updated Apr 24, 2025Apr 24, 2025

    • lennonlab2.github.io

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • R-package.installer

      Public
      Simplify re-loading of packages following R update
      R
      •1•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • viro.fluidics

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Apr 6, 2025Apr 6, 2025

    • SporePlaque

      Public
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 6, 2025Apr 6, 2025

    • seedtheory

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 6, 2025Apr 6, 2025

    • p-meso

      Public
      GitHub Repo for mothur and R code included in Muscarella ME, Bird KC, Larsen ML, Placella SA, Lennon JT (In Press) Phosphorus resource heterogeneity in microbia…
      R
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated Apr 6, 2025Apr 6, 2025

    • Rpf

      Public
      OCaml
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Mar 29, 2025Mar 29, 2025

    • ResidenceTime_NichePartitioning

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Feb 14, 2025Feb 14, 2025