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    • mlarray

      Public
      Array format specialized for Machine Learning with Blosc2 backend and standardized metadata.
      Python
      01700Updated Feb 20, 2026Feb 20, 2026
    • Python
      0600Updated Feb 20, 2026Feb 20, 2026
    • nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ di…
      Python
      43359181Updated Feb 19, 2026Feb 19, 2026
    • Python
      162505Updated Feb 19, 2026Feb 19, 2026
    • MedVol

      Public
      Python
      01700Updated Feb 18, 2026Feb 18, 2026
    • nnUNet

      Public
      Python
      2.3k8k33432Updated Feb 18, 2026Feb 18, 2026
    • panther

      Public
      Python
      2600Updated Feb 17, 2026Feb 17, 2026
    • Winning Solution of the ODELIA Breast MRI Challenge 2025
      0610Updated Feb 16, 2026Feb 16, 2026
    • VoxTell

      Public
      Free-Text Promptable Universal 3D Medical Image Segmentation
      Python
      711450Updated Feb 13, 2026Feb 13, 2026
    • Python
      5814954Updated Feb 9, 2026Feb 9, 2026
    • A reader/writer Napari plugin for MLArray images
      Python
      0101Updated Feb 3, 2026Feb 3, 2026
    • LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
      Python
      99030Updated Feb 3, 2026Feb 3, 2026
    • Python
      0700Updated Jan 22, 2026Jan 22, 2026
    • nnActive

      Public
      Python
      01530Updated Jan 20, 2026Jan 20, 2026
    • Python
      01000Updated Jan 16, 2026Jan 16, 2026
    • ToothSeg

      Public
      Python
      12810Updated Jan 7, 2026Jan 7, 2026
    • Python
      01300Updated Jan 7, 2026Jan 7, 2026
    • Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.
      Python
      11400Updated Dec 22, 2025Dec 22, 2025
    • ViData

      Public
      A unified Python toolkit for managing, processing, and analyzing 2D and 3D vision data — from raw files to task-aware analytics. Designed to streamline computer…
      Python
      0300Updated Dec 22, 2025Dec 22, 2025
    • Plugin to send and receive multi-dimensional image data for visualization in Napari over the network.
      Python
      0200Updated Dec 19, 2025Dec 19, 2025
    • 0000Updated Dec 17, 2025Dec 17, 2025
    • Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
      Python
      1113061Updated Dec 8, 2025Dec 8, 2025
    • This repository provides Docker images for running nnUNet inference in a reproducible and containerized environment, tailored for the EUCAIM project.
      Dockerfile
      1000Updated Dec 8, 2025Dec 8, 2025
    • Jupyter Notebook
      0000Updated Dec 4, 2025Dec 4, 2025
    • confly

      Public
      Python
      0200Updated Dec 3, 2025Dec 3, 2025
    • [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation
      Python
      2610Updated Dec 3, 2025Dec 3, 2025
    • Python
      0200Updated Dec 3, 2025Dec 3, 2025
    • tqdmp

      Public
      Multiprocessing with tqdm progressbars!
      Python
      0310Updated Dec 3, 2025Dec 3, 2025
    • Python
      3700Updated Nov 26, 2025Nov 26, 2025
    • patchly

      Public
      A grid sampler for larger-than-memory N-dimensional images
      Python
      22700Updated Nov 11, 2025Nov 11, 2025