Skip to content
Change the repository type filter

All

    Repositories list

    • This repo has the code for the CFDE Workbench. The workbench serves the CFDE Information Portal and the CFDE Data Portal
      TypeScript
      01122Updated Feb 19, 2026Feb 19, 2026
    • Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      TypeScript
      192051Updated Feb 18, 2026Feb 18, 2026
    • Jupyter Notebook
      0001Updated Feb 17, 2026Feb 17, 2026
    • D2H2-site

      Public
      HTML
      0001Updated Feb 17, 2026Feb 17, 2026
    • appyter

      Public
      jinja2-enabled jupyter notebooks
      Python
      6371514Updated Feb 13, 2026Feb 13, 2026
    • cfde-c2m2

      Public
      A collection of utilities for simplifying the C2M2 submission process.
      Python
      0300Updated Feb 13, 2026Feb 13, 2026
    • Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      Jupyter Notebook
      19100Updated Feb 11, 2026Feb 11, 2026
    • k8s-docs

      Public
      Ma'ayanlab k8s server admin and user guide
      Python
      1000Updated Feb 6, 2026Feb 6, 2026
    • Jupyter Notebook
      102801Updated Feb 6, 2026Feb 6, 2026
    • A collection of useful functions for bioinformatics data analysis
      Python
      22500Updated Feb 5, 2026Feb 5, 2026
    • xalign

      Public
      Hassle-free RNA-seq alignment
      Python
      1000Updated Jan 28, 2026Jan 28, 2026
    • TypeScript
      0040Updated Jan 27, 2026Jan 27, 2026
    • Innovative Health Data Hub (IHDH) frontend
      JavaScript
      0060Updated Jan 26, 2026Jan 26, 2026
    • Oauth flask server
      Python
      0000Updated Jan 26, 2026Jan 26, 2026
    • gsfm

      Public
      The gene set foundation model training, evaluation, and benchmark code.
      Jupyter Notebook
      0000Updated Jan 23, 2026Jan 23, 2026
    • A separate repository for the FAIRshake Insignia Client Javascript Library
      JavaScript
      10013Updated Jan 22, 2026Jan 22, 2026
    • Appyter for enrichr canvases, scatter plots, and Manhattan plots
      Jupyter Notebook
      2031Updated Jan 21, 2026Jan 21, 2026
    • A repository for the Playbook Workflow Builder project.
      TypeScript
      1925400Updated Jan 20, 2026Jan 20, 2026
    • L2S2

      Public
      Jupyter Notebook
      0121Updated Jan 14, 2026Jan 14, 2026
    • archs4dx

      Public
      JavaScript
      0170Updated Jan 7, 2026Jan 7, 2026
    • JavaScript
      0020Updated Dec 19, 2025Dec 19, 2025
    • Croissant processing scripts and files for CFDE and Harmonizome datasets
      Jupyter Notebook
      0000Updated Dec 18, 2025Dec 18, 2025
    • Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighb…
      TypeScript
      19000Updated Dec 12, 2025Dec 12, 2025
    • A catalog of appyter notebooks
      Jupyter Notebook
      4841255Updated Dec 10, 2025Dec 10, 2025
    • sc2DAT

      Public
      JavaScript
      0120Updated Nov 21, 2025Nov 21, 2025
    • Jupyter Notebook
      0040Updated Nov 18, 2025Nov 18, 2025
    • proxy

      Public
      A convenient and generic proxy image
      Shell
      1000Updated Oct 31, 2025Oct 31, 2025
    • template for mcp server using the typescript sdk
      TypeScript
      0000Updated Oct 27, 2025Oct 27, 2025
    • Documentation for CFDE Navigation Wheel
      TypeScript
      2112Updated Oct 21, 2025Oct 21, 2025
    • Python Jupyter notebooks for Enrichr species databases
      Jupyter Notebook
      0300Updated Oct 8, 2025Oct 8, 2025