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    39 repositories

    • nanopath

      Public
      Python
      •
      Apache License 2.0
      •4•4•0•0•Updated Jun 1, 2026Jun 1, 2026

    • medmarks

      Public
      Automated LLM evaluation suite for medical tasks
      Python
      •
      MIT License
      •36•40•7•15•Updated May 31, 2026May 31, 2026

    • CortexMAE

      Public
      CortexMAE fMRI foundation model
      Jupyter Notebook
      •
      Apache License 2.0
      •14•47•0•0•Updated May 28, 2026May 28, 2026

    • Brainmarks

      Public
      An open evaluation suite for fMRI foundation models
      Jupyter Notebook
      •
      MIT License
      •11•13•0•0•Updated May 28, 2026May 28, 2026

    • smri-fm

      Public
      Jupyter Notebook
      •
      MIT License
      •9•3•0•2•Updated May 28, 2026May 28, 2026

    • asparagus

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•0•0•2•Updated May 27, 2026May 27, 2026

    • OpenMidnight

      Public
      Python
      •
      Apache License 2.0
      •21•48•1•8•Updated May 23, 2026May 23, 2026

    • asparagus_preprocessing

      Public
      Python
      •3•0•0•0•Updated May 22, 2026May 22, 2026

    • med-lm-train

      Public
      Python
      •6•1•0•3•Updated May 14, 2026May 14, 2026

    • NeuroSTORM

      Public
      Python
      •
      Apache License 2.0
      •22•0•0•0•Updated May 4, 2026May 4, 2026

    • thunder

      Public
      [NeurIPS25 D&B Spotlight] A tile-level histopathology image understanding benchmark
      Python
      •
      Creative Commons Attribution 4.0 International
      •14•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • SynthSeg

      Public
      Contrast-agnostic segmentation of MRI scans
      Python
      •
      Apache License 2.0
      •156•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • eva-probe

      Public
      Evaluation framework for oncology foundation models (FMs)
      Python
      •
      Apache License 2.0
      •37•2•21•7•Updated Feb 25, 2026Feb 25, 2026

    • SwiFT

      Public
      Official repo for SwiFT: Swin 4D fMRI Transformer
      Python
      •
      Apache License 2.0
      •20•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • Brain-Harmony

      Public
      Official codebase for "Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens" (NeruIPS 2025).
      Python
      •52•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • BrainLM

      Public
      Jupyter Notebook
      •
      Other
      •5•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • Brain-JEPA

      Public
      Official codebase for "Brain-JEPA: Brain Dynamics Foundation Model with Gradient Positioning and Spatiotemporal Masking" (NeurIPS 2024, Spotlight).
      Python
      •41•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • path-fm-dinov3

      Public
      Python
      •
      Other
      •3•3•0•0•Updated Nov 29, 2025Nov 29, 2025

    • med-lm-data

      Public
      Processing post-training datasets for medicine
      2•0•3•1•Updated Sep 3, 2025Sep 3, 2025

    • dinov3

      Public
      MedARC DinoV3
      Jupyter Notebook
      •
      Other
      •865•1•0•0•Updated Aug 29, 2025Aug 29, 2025

    • algonauts2025

      Public
      Repository for MedARC group tackling Algonauts 2025 challenge
      Jupyter Notebook
      •
      MIT License
      •4•11•0•0•Updated Aug 5, 2025Aug 5, 2025

    • MIRAGE

      Public
      Jupyter Notebook
      •
      MIT License
      •0•6•6•0•Updated May 28, 2025May 28, 2025

    • MindEyeV2

      Public
      Jupyter Notebook
      •
      MIT License
      •43•207•12•0•Updated May 28, 2025May 28, 2025

    • clinical-lm-datasets

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • CLIBP

      Public
      Contrastive Language–Image-Brain Pre-training
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Aug 17, 2024Aug 17, 2024

    • brain-image-filtering

      Public
      Using fMRI encoding models to improve image filtering ML approaches
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Jul 9, 2024Jul 9, 2024

    • mindeye2

      Public
      mindeye v2
      HTML
      •4•1•0•0•Updated Jul 7, 2024Jul 7, 2024

    • fMRI-reconstruction-NSD

      Public
      fMRI-to-image reconstruction on the NSD dataset.
      Jupyter Notebook
      •
      MIT License
      •55•373•24•0•Updated May 22, 2024May 22, 2024

    • datatrove

      Public
      Freeing data processing from scripting madness by providing a set of platform-agnostic customizable pipeline processing blocks.
      Python
      •
      Apache License 2.0
      •269•0•0•0•Updated Feb 29, 2024Feb 29, 2024

    • lm-evaluation-harness-v2

      Public
      A framework for few-shot evaluation of language models.
      Python
      •
      MIT License
      •3.3k•0•0•0•Updated Feb 22, 2024Feb 22, 2024
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