Repositories list

• Canonical-HMM-Networks

  Public
  Canonical HMM Networks for Studying M/EEG.

  Jupyter Notebook

  •

  MIT License

  •3•5•1•0•Updated Mar 14, 2026Mar 14, 2026

• osl-dynamics

  Public
  Methods for studying brain dynamics using neuroimaging data.

  Python

  •

  Other

  •26•83•1•0•Updated Mar 14, 2026Mar 14, 2026

• DINO-MEG

  Public
  Python

  •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

• osl-foundation

  Public
  TensorFlow foundation models for MEG data analysis.

  Python

  •

  MIT License

  •1•3•1•0•Updated Mar 2, 2026Mar 2, 2026

• EphysTokenizer

  Public
  Tokenizers for non-invasive human electrophysiology data

  tokenizerneuroimagingrepresentation-learning+ 1

  tokenizerneuroimagingrepresentation-learningelectrophysiology-data

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

• Cho2026_Tokenizer

  Public
  Scripts for the Cho et al. (2026) manuscript

  deep-learningtokenizermeg+ 2

  deep-learningtokenizermegneuroimaging-analysisfoundation-models

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• Cho2026_DyNeStE

  Public
  Scripts for the Cho et al. (2025) manuscript

  deep-learningmeghidden-markov-model+ 2

  deep-learningmeghidden-markov-modelvariational-autoencoderneuroimaging-analysis

  Python

  •

  MIT License

  •0•1•0•0•Updated Feb 17, 2026Feb 17, 2026

• osl-ephys

  Public
  Electrophysiological Data Analysis Toolbox

  pythonmegeeg

  pythonmegeeg

  Python

  •

  Other

  •13•63•42•2•Updated Jan 28, 2026Jan 28, 2026

• meg2vec

  Public
  Code for applying a TS2Vec model to MEG data.

  Python

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• Cho2024_MEEG_RSN

  Public

  OHBA-analysis/Cho2024_MEEG_RSN’s past year of commit activity
  Scripts for the Cho et al. (2024) manuscript

  neurosciencehidden-markov-modelneuroimaging-analysis

  neurosciencehidden-markov-modelneuroimaging-analysis

  Python

  •

  MIT License

  •2•6•0•0•Updated Aug 28, 2025Aug 28, 2025

• Quinn2025-RobustReplicableAge

  Public
  Python

  •0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

• Gohil2025_AgeEffectsRSNs

  Public
  Scripts and data from Gohil et al., Effects of age on resting-state cortical networks (2025).

  Python

  •2•0•0•0•Updated Jun 1, 2025Jun 1, 2025

• Gohil2024_NetworkAnalysisOfTaskData

  Public
  Example scripts for Gohil et al., "Dynamic Network Analysis of Electrophysiological Task Data" (2024).

  Python

  •3•6•0•0•Updated May 25, 2025May 25, 2025

• OHBA-Examples

  Public
  Example scripts used by OHBA.

  Jupyter Notebook

  •0•0•0•0•Updated May 17, 2025May 17, 2025

• osl-workshop-2025-dynamics

  Public
  Notebooks for the 2025 osl-workshop (dynamics)

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 16, 2025May 16, 2025

• Huang2025_ModelVariabilityWithEmbeddings

  Public
  Scripts for the "Modelling subject variability in dynamic functional brain networks using embeddings" manuscript

  Python

  •

  MIT License

  •2•0•1•0•Updated Feb 26, 2025Feb 26, 2025

• HMM-MAR

  Public
  Toolbox for segmentation and characterisation of transient connectivity

  MATLAB

  •

  GNU General Public License v3.0

  •97•234•2•1•Updated Feb 10, 2025Feb 10, 2025

• Trubshaw2025_NeurodegenerativeDisorders

  Public
  Analysis scripts for reproducing the results in (Trubshaw, 2025).

  Python

  •1•1•0•0•Updated Jan 30, 2025Jan 30, 2025

• Tinda

  Public
  Temporal-Interval Network Density Analysis

  MATLAB

  •4•5•0•0•Updated Dec 3, 2024Dec 3, 2024

• OHBA-analysis.github.io

  Public
  CSS

  •1•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• Huang2024_EvidenceForUncoupledDynamics

  Public
  Scripts for the "Evidence for transient, uncoupled power and functional connectivity dynamics" manuscript.

  Python

  •

  MIT License

  •1•2•0•0•Updated Sep 5, 2024Sep 5, 2024

• meg-simulation

  Public
  Scripts to simulate MEG data

  Python

  •0•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• Quinn2022_GLMSpectrum

  Public
  Python

  •

  MIT License

  •1•10•0•0•Updated Nov 2, 2023Nov 2, 2023

• Kohl2023_PD_HMM

  Public
  Python

  •

  MIT License

  •0•2•0•0•Updated May 17, 2023May 17, 2023

• osl-docs

  Public
  Documentation for Matlab OSL - NO LONGER SUPPORTED - Please use Python version instead: https://github.com/OHBA-analysis/osl-ephys

  HTML

  •1•0•0•5•Updated Apr 26, 2023Apr 26, 2023

• osl-core

  Public
  Matlab tools for running M/EEG analyses - NO LONGER SUPPORTED - Please use Python Version Instead: https://github.com/OHBA-analysis/osl-ephys

  MATLAB

  •14•31•26•2•Updated Apr 26, 2023Apr 26, 2023

• RepresentationalDynamicsModelling

  Public
  MATLAB

  •3•1•0•1•Updated Jun 9, 2022Jun 9, 2022

• Higgins2020_Neuron

  Public
  This repository contains all the files used for the analysis in the paper "Replay bursts in humans coincide with activation of the default mode and parietal alp…

  MATLAB

  •3•3•0•0•Updated Nov 19, 2021Nov 19, 2021

• Quinn2021_Waveform

  Public
  Analysis scripts accompanying "Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics" https://doi.org/10.1101/2021.04.12.439547

  python-3emdcc-by+ 3

  python-3emdcc-byoscillationsnon-linear-dynamicsoriginal-analysis

  Python

  •

  Other

  •2•8•0•0•Updated Sep 23, 2021Sep 23, 2021

• ohba_maxfilter

  Public
  Python tool for batch processing Megin Maxfilter processing on fif MEG files

  Python

  •1•0•0•0•Updated Jul 9, 2021Jul 9, 2021