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29 repositories
igvf-ui
PublicThe Next.js-based UI portion of IGVF-DACC that works with igvfdigvfd
PublicMetadata database for IGVF projectshared-infrastructure
PublicReusable or common CDK piecessnovault
PublicThe SnoVault general purpose hybrid object-relational databasecdk-igvf-prod
PublicRepo for internal infrastructure in igvf-prod accountpankbase-python-client
PublicAutogenerated Python client for the IGVF API.github
Publicdig-dug-portal
PublicPanKbase site (https://pankbase.org)snRNAseq-NextFlow
PublicPanKbase-scRNA-seq
PublicCollection of code and documentation to replicate islet single cell map on PanKbase.PanKbase-donor-summary
PublicShiny app for PanKbase Donor Summary ToolPanKgraph-finemap-coloc
PublicCollection of code and documentation to conduct fine-mapping and colocalization analysis for PanKbase and PanKgraph.PanKbase-DEG-analysis
PublicCollection of code and documentation to replicate islet DEG analysis on PanKbase.external-feedback
PublicHPAP-scATAC-seq
Publicdig-aggregator-methods
PublicMonorepo of methods implemented for the Aggregator- Autogenerated OpenAPI specification used by IGVF clients
cdk-igvf-sandbox
PublicRepo for internal infrastructure in igvf-sandbox (igvf-staging) accountcdk-igvf-staging
PublicRepo for internal infrastructure in igvf-staging accountcdk-igvf-dev
PublicRepo for internal infrastructure in igvf-dev accountwrangler-tools
Publicdig-bioindex
PublicBIO index for genetic records stored in S3 and FastAPI server.gtex-pipeline
PublicGTEx & TOPMed data production and analysis pipelinesontology
PublicThe script is used to update the ontology versions used for searching and validation in IGVF project.pyramid_localroles
PublicLocal roles authorization policy for Pyramid
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