Skip to content

@Sage-Bionetworks Sage Bionetworks

Change the repository type filter

All

    Repositories list

    660 repositories

    • fs-synapse

      Public
      A Synapse implementation of the PyFileSystem2 interface
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 26, 2025Mar 26, 2025

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•5•0•6•Updated Mar 26, 2025Mar 26, 2025

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •
      Apache License 2.0
      •25•6•3•32•Updated Mar 26, 2025Mar 26, 2025

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•25•0•5•Updated Mar 25, 2025Mar 25, 2025

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•1•Updated Mar 25, 2025Mar 25, 2025

    • synapsePythonClient

      Public
      Programmatic interface to Synapse services for Python
      synapsepython
      Python
      •
      Apache License 2.0
      •70•71•3•5•Updated Mar 25, 2025Mar 25, 2025

    • aws-infra

      Public
      Global Sage Bionetworks AWS Infrastructure
      scipool
      Jinja
      •
      Apache License 2.0
      •14•8•0•1•Updated Mar 24, 2025Mar 24, 2025

    • sage-monorepo

      Public
      Where OpenChallenges, Agora, and other Sage open source apps are built
      angularopenapimonorepofull-stackfairdeveloper-experiencenxagoraspecification-firstsage-bionetworks
      TypeScript
      •
      Apache License 2.0
      •13•24•149•8•Updated Mar 22, 2025Mar 22, 2025

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •54•39•0•4•Updated Mar 21, 2025Mar 21, 2025

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•1•3•1•Updated Mar 21, 2025Mar 21, 2025

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •40•23•1•5•Updated Mar 21, 2025Mar 21, 2025

    • streamlit-snowflake-template

      Public template
      Python
      •
      Apache License 2.0
      •2•2•0•1•Updated Mar 20, 2025Mar 20, 2025

    • BridgeServer2

      Public
      Bridge Server 2.0 running on Spring Boot
      Java
      •
      Other
      •22•5•0•0•Updated Mar 20, 2025Mar 20, 2025

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      21•2•0•0•Updated Mar 19, 2025Mar 19, 2025

    • BridgeServer2-infra

      Public
      CloudFormation templates for BridgeServer2
      Shell
      •
      Other
      •7•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • BridgeWorkerPlatform-infra

      Public
      Setup and configure Infrastructure for Bridge Worker Platform app on AWS
      Other
      •6•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•12•1•3•Updated Mar 19, 2025Mar 19, 2025

    • Bridge-Exporter-infra

      Public
      Setup Bridge exporter infrastructure
      Other
      •4•0•0•1•Updated Mar 19, 2025Mar 19, 2025

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•4•0•3•Updated Mar 19, 2025Mar 19, 2025

    • genie-bpc-brca-landscape-manu

      Public
      Landscape manuscript analyses for the GENIE BPC cohort of Breast cancer
      R
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • Exceptional-Longevity

      Public
      Repository to store scripts for data curation and backend portal drivers for the ELITE Portal.
      HTML
      •0•1•0•0•Updated Mar 18, 2025Mar 18, 2025

    • ELITEPortalWorkshop

      Public
      Materials and planning for ELITE Portal technical workshops
      0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•1•0•0•Updated Mar 17, 2025Mar 17, 2025

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •21•5•0•2•Updated Mar 15, 2025Mar 15, 2025

    • AD-git-demo

      Public
      A project for AD DCC team github demonstration
      0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

    • scicomp-provisioner

      Public
      An service to auto provision resources
      Jinja
      •
      Apache License 2.0
      •45•1•0•0•Updated Mar 12, 2025Mar 12, 2025

    • synapser

      Public
      An R package providing programmatic access to Synapse
      rsynapse
      R
      •
      Apache License 2.0
      •22•35•6•2•Updated Mar 11, 2025Mar 11, 2025

    • nbconvert-webapp

      Public
      Converts ipynb file into html. Packaged for Lambda deployment
      Python
      •2•0•0•1•Updated Mar 11, 2025Mar 11, 2025

    • genie-ddr

      Public
      An investigation into the prevalence of oncogenic DDR mutations in the GENIE database.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

    • shiny-base

      Public
      Base Docker image for Shiny applications
      Dockerfile
      •1•0•0•1•Updated Mar 7, 2025Mar 7, 2025