SciML Open Source Scientific Machine Learning

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181 repositories

Catalyst.jl
Public
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
simulation biology dsl julia systems-biology ode reaction-network differential-equations sde chemical-reactions
Julia
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Other
•79•468•95•15•Updated Jan 18, 2025Jan 18, 2025
ModelingToolkit.jl
Public
An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations
computer-algebra optimization symbolic dde ordinary-differential-equations sde pde dae stochastic-differential-equations delay-differential-equations
Julia
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Other
•211•1.5k•333•70•Updated Jan 18, 2025Jan 18, 2025
ReservoirComputing.jl
Public
Reservoir computing utilities for scientific machine learning (SciML)
rnn differential-equations echo-state-networks reservoir-computing scientific-machine-learning sciml machine-learning julia
Julia
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MIT License
•39•210•26•4•Updated Jan 18, 2025Jan 18, 2025
RuntimeGeneratedFunctions.jl
Public
Functions generated at runtime without world-age issues or overhead
julia
Julia
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MIT License
•14•101•14•0•Updated Jan 18, 2025Jan 18, 2025
PoissonRandom.jl
Public
Fast Poisson Random Numbers in pure Julia for scientific machine learning (SciML)
high-performance-computing poisson poisson-distribution poisson-processes scientific-machine-learning sciml tau-leaping julia
Julia
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Other
•6•16•1•0•Updated Jan 18, 2025Jan 18, 2025
EllipsisNotation.jl
Public
Julia-based implementation of ellipsis array indexing notation `..`
arrays julia julia-language julialang
Julia
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Other
•14•90•2•0•Updated Jan 18, 2025Jan 18, 2025
BoundaryValueDiffEq.jl
Public
Boundary value problem (BVP) solvers for scientific machine learning (SciML)
gpu bvp neural-ode scientific-machine-learning neural-differential-equations neural-bvp sciml differential-equations differentialequations
Julia
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Other
•36•46•25•4•Updated Jan 18, 2025Jan 18, 2025
LinearSolve.jl
Public
LinearSolve.jl: High-Performance Unified Interface for Linear Solvers in Julia. Easily switch between factorization and Krylov methods, add preconditioners, and all in one interface.
gpu distributed-computing factorization amg multigrid krylov-methods linear-solvers preconditioners sciml newton-krylov
Julia
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Other
•56•250•66•12•Updated Jan 18, 2025Jan 18, 2025
GlobalSensitivity.jl
Public
Robust, Fast, and Parallel Global Sensitivity Analysis (GSA) in Julia
ode morris-method ordinary-differential-equations sensitivity-analysis global-sensitivity-analysis gsa sobol-method efast julia julia-language
Julia
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MIT License
•21•52•24•4•Updated Jan 18, 2025Jan 18, 2025
SymbolicIndexingInterface.jl
Public
A general interface for symbolic indexing of SciML objects used in conjunction with Domain-Specific Languages
dsl indexing symbolic domain-specific-language symbolic-computation scientific-machine-learning sciml high-level-interfaces acausal-modeling
Julia
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MIT License
•8•15•10•10•Updated Jan 17, 2025Jan 17, 2025
DataInterpolations.jl
Public
A library of data interpolation and smoothing functions
Julia
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MIT License
•47•239•23•4•Updated Jan 17, 2025Jan 17, 2025
FindFirstFunctions.jl
Public
Faster `findfirst(==(val), dense_vector)`.
Julia
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MIT License
•3•8•3•0•Updated Jan 17, 2025Jan 17, 2025
OrdinaryDiffEq.jl
Public
High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
high-performance ordinary-differential-equations adaptive differentialequations event-handling hacktoberfest julia ode differential-equations scientific-machine-learning
Julia
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Other
•216•572•307•44•Updated Jan 17, 2025Jan 17, 2025
DiffEqBayes.jl
Public
Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning
dde stan ordinary-differential-equations sde dae stochastic-differential-equations neural-ode neural-differential-equations scientific-ml scientific-ai
Julia
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Other
•29•120•14•2•Updated Jan 17, 2025Jan 17, 2025
EasyModelAnalysis.jl
Public
High level functions for analyzing the output of simulations
Julia
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MIT License
•14•81•23•7•Updated Jan 17, 2025Jan 17, 2025
DiffEqDocs.jl
Public
Documentation for the DiffEq differential equations and scientific machine learning (SciML) ecosystem
ode dde differential-equations sde dae hacktoberfest neural-ode scientific-machine-learning sciml physics-informed-learning
Julia
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Other
•246•280•22•4•Updated Jan 17, 2025Jan 17, 2025
CellMLToolkit.jl
Public
CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.
systems-biology physiology cellml julia ode differential-equations scientific-machine-learning sciml
Julia
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Other
•16•62•9•2•Updated Jan 17, 2025Jan 17, 2025
PreallocationTools.jl
Public
Tools for building non-allocating pre-cached functions in Julia, allowing for GC-free usage of automatic differentiation in complex codes
automatic-differentiation garbage-collection high-performance-computing differentiable-programming
Julia
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Other
•14•114•3•0•Updated Jan 17, 2025Jan 17, 2025
SciMLStructures.jl
Public
A structure interface for SciML to give queryable properties from user data and parameters
api interfaces
Julia
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MIT License
•5•8•0•0•Updated Jan 16, 2025Jan 16, 2025
BaseModelica.jl
Public
Importers for the BaseModelica standard into the Julia ModelingToolkit ecosystem
julia ode modelica differential-equations dae sciml symbolic-numeric-computing
Julia
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MIT License
•3•7•4•0•Updated Jan 16, 2025Jan 16, 2025
SciMLBase.jl
Public
The Base interface of the SciML ecosystem
julia ode dde ordinary-differential-equations differentialequations sde dae scientific-machine-learning sciml
Julia
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MIT License
•105•141•64•32•Updated Jan 16, 2025Jan 16, 2025
ParameterizedFunctions.jl
Public
A simple domain-specific language (DSL) for defining differential equations for use in scientific machine learning (SciML) and other applications
parameters jacobian differential-equations scientific-machine-learning sciml
Julia
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Other
•18•76•1•1•Updated Jan 16, 2025Jan 16, 2025
Optimization.jl
Public
Mathematical Optimization in Julia. Local, global, gradient-based and derivative-free. Linear, Quadratic, Convex, Mixed-Integer, and Nonlinear Optimization in one simple, fast, and differentiable interface.
automatic-differentiation global-optimization hacktoberfest nonlinear-optimization convex-optimization algorithmic-differentiation mixed-integer-programming derivative-free-optimization sciml local-optimization
Julia
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MIT License
•85•746•75•13•Updated Jan 16, 2025Jan 16, 2025
PDEBase.jl
Public
Common types and interface for discretizers of ModelingToolkit PDESystems.
Julia
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MIT License
•5•12•10•0•Updated Jan 16, 2025Jan 16, 2025
StructuralIdentifiability.jl
Public
Fast and automatic structural identifiability software for ODE systems
parameter-estimation differentialequations structural-identifiability julia
Julia
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MIT License
•18•113•9•5•Updated Jan 16, 2025Jan 16, 2025
CommonSolve.jl
Public
A common solve function for scientific machine learning (SciML) and beyond
interface composibility scientific-machine-learning sciml
Julia
•8•21•1•0•Updated Jan 16, 2025Jan 16, 2025
SciMLBenchmarks.jl
Public
Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R
python benchmark ai julia matlab pytorch ode partial-differential-equations differential-equations differentialequations
MATLAB
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MIT License
•86•319•35•83•Updated Jan 16, 2025Jan 16, 2025
SciMLExpectations.jl
Public
Fast uncertainty quantification for scientific machine learning (SciML) and differential equations
integration differentialequations uncertainty-quantification uq julia ode differential-equations scientific-machine-learning sciml
Julia
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Other
•20•65•29•11•Updated Jan 15, 2025Jan 15, 2025
ComponentArrays.jl
Public
Arrays with arbitrarily nested named components.
machine-learning simulation optimization julia modeling array controls neural-networks arrays dynamical-systems
Julia
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MIT License
•35•303•68•11•Updated Jan 15, 2025Jan 15, 2025
SurrogatesBase.jl
Public
Basically just a surrogate in disguise
Julia
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MIT License
•3•4•0•0•Updated Jan 14, 2025Jan 14, 2025