ShawHahnLab

All

14 repositories

chiimp
Public
Computational, High-throughput Individual Identification through Microsatellite Profiling
r-package tandem-repeats microsatellites
r-package tandem-repeats microsatellites short-tandem-repeats
R
•
GNU Affero General Public License v3.0
•3•2•9•1•Updated Feb 12, 2026Feb 12, 2026
Habib_et_al_2025_HammingDistance
Public
Script to identify regions of differential selection across the HIV or SHIV envelope gene in longitudinal single genome sequencing data.
R
•
MIT License
•0•0•0•0•Updated Jan 21, 2026Jan 21, 2026
igseqhelper
Public
Antibody analysis umbrella package
snakemake immunology
snakemake immunology
Python
•0•0•0•0•Updated Dec 9, 2025Dec 9, 2025
Habib_et_al_2025_igseq
Public
Analysis workflow for lineage tracing rhesus macaque antibody data for Habib et al. 2025.
Python
•0•0•0•0•Updated Sep 25, 2025Sep 25, 2025
ARMADiLLO
Public
C++
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Other
•1•0•0•0•Updated Sep 18, 2025Sep 18, 2025
umbra
Public
Python package and executable for Linux for managing Illumina sequencing runs
bioinformatics sequencing illumina
bioinformatics sequencing illumina
Python
•
GNU Affero General Public License v3.0
•0•3•11•0•Updated Sep 18, 2025Sep 18, 2025
igseq
Public
IgSeq utilities
bioinformatics immunology
bioinformatics immunology
Python
•1•1•5•1•Updated Jun 12, 2025Jun 12, 2025
partis
Public
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
C++
•
GNU General Public License v3.0
•33•0•0•0•Updated Aug 20, 2024Aug 20, 2024
MINING-D
Public
A tool for de novo inference of D genes from immunosequencing data in diverse species
Python
•1•0•0•0•Updated Jul 25, 2024Jul 25, 2024
SONAR
Public
Software for Ontogenic aNalysis of Antibody Repertoires
Python
•
GNU General Public License v3.0
•9•0•0•0•Updated Apr 13, 2024Apr 13, 2024
vquest
Public
Automate IMGT V-QUEST usage on imgt.org
bioinformatics immunology imgt
bioinformatics immunology imgt
Python
•
GNU Affero General Public License v3.0
•4•15•2•0•Updated Oct 11, 2022Oct 11, 2022
chiimp-paper
Public
Supporting code for the microsatellite genotyping paper introducing CHIIMP
reproducible-research tandem-repeats microsatellites
reproducible-research tandem-repeats microsatellites short-tandem-repeats
Makefile
•1•1•0•0•Updated Feb 1, 2021Feb 1, 2021
lassie
Public
Select sites and sequences from a serially sampled alignment
Python
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Other
•3•0•0•0•Updated Apr 10, 2019Apr 10, 2019
genbank-sub-20181109-dloop
Public
GenBank Submission 2018/11/09
genbank ncbi
genbank ncbi
Python
•0•1•0•0•Updated Nov 21, 2018Nov 21, 2018