TNTurnerLab

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19 repositories

HAT-FLEX
Public
Flexible Trio DNV detection on existing VCFs.
vcf snv denovo
vcf snv denovo indel dnv dnm denovo-mutation denovo-variant
Python
•
MIT License
•0•5•0•0•Updated Mar 4, 2026Mar 4, 2026
DiamondsDenovo
Public
DiamondsDenovo is a tool to calculate enrichment of de novo variants in the genome
genomics genetics denovo
genomics genetics denovo
Python
•
MIT License
•0•2•0•0•Updated Mar 4, 2026Mar 4, 2026
Hare
Public
A de novo variant caller leveraging Parabricks GPU accelerated variant calling
genomics genetics gpu
genomics genetics gpu denovo
Python
•
MIT License
•0•8•0•0•Updated Dec 12, 2025Dec 12, 2025
acorn
Public
acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating f…
r genomics genome
r genomics genome variants snv denovo indel mnv
R
•
MIT License
•0•7•0•0•Updated Nov 26, 2025Nov 26, 2025
HAT
Public
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
cpu genomics genetics
cpu genomics genetics gpu denovo
Python
•
MIT License
•0•24•0•0•Updated Nov 18, 2025Nov 18, 2025
CNPI
Public
Software for Rapid Analyses of Human Copy Number Data
bioinformatics genomics genome
bioinformatics genomics genome copy-number-variation genotype karyotype copy-number x-chromosome y-chromosome autosome
C++
•
MIT License
•0•7•0•0•Updated Aug 14, 2025Aug 14, 2025
3D-CLUMP
Public
Software to test for clustering of missense variants in 3D protein structures.
genomics cluster structure
genomics cluster structure protein proteomics case-control missense
Python
•
MIT License
•0•2•0•0•Updated Aug 5, 2025Aug 5, 2025
denovo-db_helper_scripts
Public
Python
•
MIT License
•1•0•0•0•Updated Aug 4, 2025Aug 4, 2025
ElGenomaPequeno
Public
El genoma pequeño - analysis workflow for "the little genome"
R
•
MIT License
•1•0•0•0•Updated Sep 25, 2024Sep 25, 2024
fitDNM
Public
Code for running fitDNM genome-wide by using Snakemake
enrichment genomics genetics
enrichment genomics genetics noncoding
Python
•
MIT License
•0•5•0•0•Updated Mar 21, 2024Mar 21, 2024
ACES
Public
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, …
cloud genomics genetics
cloud genomics genetics conservation cromwell
Python
•
MIT License
•0•6•0•0•Updated Mar 21, 2024Mar 21, 2024
WTC-11
Public
WTC-11 Genome Cell Line Analysis
genome cell wgs
genome cell wgs wtc-11 auts2 linkedreads
MIT License
•0•2•0•0•Updated Feb 19, 2024Feb 19, 2024
Revio_N2A
Public
TNTurnerLab Code for Revio Neuro-2a paper
genomics genetics methylation
genomics genetics methylation pacbio cells variation cell-lines revio
Shell
•
MIT License
•0•1•0•0•Updated Feb 15, 2024Feb 15, 2024
HT22_genome_epigenome_functional_genomics_project
Public
hi-c rnaseq pacbio
hi-c rnaseq pacbio cells arima wgs illumina cell-lines
HTML
•
MIT License
•0•4•0•0•Updated Feb 13, 2024Feb 13, 2024
clustering_in_cancer_vs_ndd_paper
Public
R
•
MIT License
•0•1•0•0•Updated Feb 4, 2024Feb 4, 2024
Tortoise
Public
Tortoise is the CPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
cpu genomics genetics
cpu genomics genetics denovo
Python
•
MIT License
•0•6•0•0•Updated Nov 9, 2023Nov 9, 2023
PYRUS
Public
PYRUS is a plotting tool that uses tabix files to create line graphs from bed file data. Utilization of PYRUS includes having a quick plotter for copy number va…
genomics genetics plot
genomics genetics plot wgs cnv cnv-plot copy-number-variant
R
•
MIT License
•0•4•0•0•Updated Sep 18, 2023Sep 18, 2023
wdl_workflows
Public
WDL
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MIT License
•0•0•0•0•Updated Jul 20, 2022Jul 20, 2022
GPU_accelerated_de_novo_workflow
Public
HARE is the GPU workflow of the HAT https://github.com/TNTurnerLab/HAT tools.
genomics genetics gpu
genomics genetics gpu denovo
Shell
•
MIT License
•0•4•0•0•Updated Aug 5, 2021Aug 5, 2021