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    • sgn

      Public
      The code behind The Triticeae Toolbox (T3) - based off of breedbase
      PLpgSQL
      MIT License
      43000Updated May 1, 2026May 1, 2026
    • mason

      Public
      Mason components for the T3 version of Breedbase
      HTML
      0000Updated Apr 20, 2026Apr 20, 2026
    • An agent skill used to convert raw breeder data to breedbase upload templates using an AI agent (such as Claude Code)
      0000Updated Mar 26, 2026Mar 26, 2026
    • A landing page for The Triticeae Toolbox
      Astro
      0000Updated Mar 19, 2026Mar 19, 2026
    • BrAPI.R

      Public
      Simple wrapper functions for making BrAPI requests
      R
      Other
      0100Updated Feb 20, 2026Feb 20, 2026
    • breedbase_dockerfile

      Public archive
      Forked from solgenomics/breedbase_dockerfile
      Dockerfile
      MIT License
      0210Updated Feb 5, 2026Feb 5, 2026
    • R Shiny app for combining partially observed covariance matrices
      R
      0000Updated Jan 16, 2026Jan 16, 2026
    • A BrAPI-powered bulk germplasm search API server and website
      JavaScript
      0100Updated Jan 12, 2026Jan 12, 2026
    • An R package that helps generate breeDBase upload templates
      R
      Other
      1300Updated Dec 5, 2025Dec 5, 2025
    • Utility scripts for converting between trait ontology file formats
      Perl
      2200Updated Jul 30, 2025Jul 30, 2025
    • breedbase

      Public
      The project structure for T3/Breedbase instances. This repository includes helper scripts, config files and mount directories for running T3/Breedbase instance…
      PLpgSQL
      0010Updated Jul 30, 2025Jul 30, 2025
    • PHGv2

      Public
      Practical Haplotype Graph from Katie Jordon with 473 accessions aligned to CSv2.1
      Perl
      GNU General Public License v3.0
      0000Updated Jul 28, 2025Jul 28, 2025
    • Building a wheat PHG on SCINet
      Shell
      0000Updated Jul 5, 2025Jul 5, 2025
    • phg_v2

      Public
      Practical Haplotype Graph (PHG) version 2
      Kotlin
      Apache License 2.0
      4001Updated May 9, 2025May 9, 2025
    • d2s_proxy

      Public
      A simple proxy server for forwarding requests from T3 to the D2S API
      JavaScript
      0000Updated Mar 14, 2025Mar 14, 2025
    • kelp

      Public
      The user interface for the kelp database
      1000Updated Aug 22, 2024Aug 22, 2024
    • R Shiny App for spatial analysis
      R
      0000Updated May 14, 2024May 14, 2024
    • Docker-Compose and SGN configs for testing a breedbase image
      Shell
      0000Updated May 14, 2024May 14, 2024
    • R
      MIT License
      1000Updated Jul 19, 2023Jul 19, 2023
    • Scripts for loading T3 data into a breeDBase instance
      Perl
      0000Updated Mar 29, 2023Mar 29, 2023
    • 2000Updated Feb 28, 2023Feb 28, 2023
    • A Docker image with R and Python
      Dockerfile
      0100Updated Oct 3, 2022Oct 3, 2022
    • T3

      Public
      The Triticeae Toolbox
      PHP
      1100Updated Sep 13, 2022Sep 13, 2022
    • 1000Updated Jul 18, 2022Jul 18, 2022
    • Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO
      1000Updated Jul 18, 2022Jul 18, 2022
    • A dockerfile for the IntegratedBreedingPlatform/brapi-sync project
      Dockerfile
      0000Updated Oct 13, 2021Oct 13, 2021
    • postgres_dockerfile

      Public archive
      docker file for breedbase postgresql instance
      PLpgSQL
      2000Updated Sep 8, 2021Sep 8, 2021
    • triticum

      Public
      mason files for the triticum database for the Jannink lab
      MIT License
      1000Updated Jan 28, 2021Jan 28, 2021
    • avena

      Public archive
      mason files for the avena database for the Jannink lab
      JavaScript
      MIT License
      1000Updated Jun 12, 2020Jun 12, 2020
    • PHG

      Public
      Practical Haplotype Graph
      Shell
      GNU General Public License v3.0
      2000Updated Jul 1, 2019Jul 1, 2019
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