Repositories list

• sgn

  Public
  The code behind The Triticeae Toolbox (T3) - based off of breedbase

  PLpgSQL

  •

  MIT License

  •4343 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2026May 1, 2026

• mason

  Public
  Mason components for the T3 version of Breedbase

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• generate-breedbase-templates-skill

  Public
  An agent skill used to convert raw breeder data to breedbase upload templates using an AI agent (such as Claude Code)

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• triticeaetoolbox.github.io

  Public
  A landing page for The Triticeae Toolbox

  Astro

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2026Mar 19, 2026

• BrAPI.R

  Public
  Simple wrapper functions for making BrAPI requests

  R

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• breedbase_dockerfile

  Public archive
  Forked from solgenomics/breedbase_dockerfile

  Dockerfile

  •

  MIT License

  •00 forks•22 stars•11 issue•00 pull requests•Updated Feb 5, 2026Feb 5, 2026

• rshiny-covcomb

  Public
  R Shiny app for combining partially observed covariance matrices

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• BrAPI-germplasm-search

  Public
  A BrAPI-powered bulk germplasm search API server and website

  JavaScript

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 12, 2026Jan 12, 2026

• breedbase.R

  Public
  An R package that helps generate breeDBase upload templates

  R

  •

  Other

  •11 fork•33 stars•00 issues•00 pull requests•Updated Dec 5, 2025Dec 5, 2025

• ontology-scripts

  Public
  Utility scripts for converting between trait ontology file formats

  Perl

  •22 forks•22 stars•00 issues•00 pull requests•Updated Jul 30, 2025Jul 30, 2025

• breedbase

  Public
  The project structure for T3/Breedbase instances. This repository includes helper scripts, config files and mount directories for running T3/Breedbase instance…

  PLpgSQL

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jul 30, 2025Jul 30, 2025

• PHGv2

  Public
  Practical Haplotype Graph from Katie Jordon with 473 accessions aligned to CSv2.1

  Perl

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 28, 2025Jul 28, 2025

• PHG-SCINet

  Public
  Building a wheat PHG on SCINet

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 5, 2025Jul 5, 2025

• phg_v2

  Public
  Practical Haplotype Graph (PHG) version 2

  Kotlin

  •

  Apache License 2.0

  •44 forks•00 stars•00 issues•11 pull request•Updated May 9, 2025May 9, 2025

• d2s_proxy

  Public
  A simple proxy server for forwarding requests from T3 to the D2S API

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 14, 2025Mar 14, 2025

• kelp

  Public
  The user interface for the kelp database

  11 fork•00 stars•00 issues•00 pull requests•Updated Aug 22, 2024Aug 22, 2024

• rshiny-spatial

  Public
  R Shiny App for spatial analysis

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2024May 14, 2024

• breedbase_test

  Public
  Docker-Compose and SGN configs for testing a breedbase image

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2024May 14, 2024

• DataFromT3UsingBrAPI

  Public
  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 19, 2023Jul 19, 2023

• loading-scripts

  Public
  Scripts for loading T3 data into a breeDBase instance

  Perl

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2023Mar 29, 2023

• ibp-wheat-traits

  Public
  22 forks•00 stars•00 issues•00 pull requests•Updated Feb 28, 2023Feb 28, 2023

• docker-r-python

  Public
  A Docker image with R and Python

  Dockerfile

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 3, 2022Oct 3, 2022

• T3

  Public
  The Triticeae Toolbox

  PHP

  •11 fork•11 star•00 issues•00 pull requests•Updated Sep 13, 2022Sep 13, 2022

• ibp-barley-traits

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Jul 18, 2022Jul 18, 2022

• ibp-oat-traits

  Public
  Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO

  11 fork•00 stars•00 issues•00 pull requests•Updated Jul 18, 2022Jul 18, 2022

• brapi_sync_dockerfile

  Public
  A dockerfile for the IntegratedBreedingPlatform/brapi-sync project

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 13, 2021Oct 13, 2021

• postgres_dockerfile

  Public archive
  docker file for breedbase postgresql instance

  PLpgSQL

  •22 forks•00 stars•00 issues•00 pull requests•Updated Sep 8, 2021Sep 8, 2021

• triticum

  Public
  mason files for the triticum database for the Jannink lab

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 28, 2021Jan 28, 2021

• avena

  Public archive
  mason files for the avena database for the Jannink lab

  JavaScript

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 12, 2020Jun 12, 2020

• PHG

  Public
  Practical Haplotype Graph

  Shell

  •

  GNU General Public License v3.0

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jul 1, 2019Jul 1, 2019