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    28 repositories

    • GIS

      Public
      This is a fork of the OHDSI GIS repository
      Shell
      •
      Apache License 2.0
      •10•0•0•1•Updated Jan 30, 2026Jan 30, 2026

    • gaiaDB

      Public
      Splitting up components of the gaiaCore PR
      PLpgSQL
      •2•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • gaiaDocker

      Public
      Split up the gaiaCore PR into component elements
      Shell
      •
      Apache License 2.0
      •2•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • pprl

      Public
      Privacy-preserving record linkage for Tufts CTSI and collaborators
      pprlprivacy-preserving-record-linkage
      Python
      •
      MIT License
      •2•2•25•0•Updated Jan 4, 2026Jan 4, 2026

    • TRDW.jl

      Public
      This is a Pluto environment with FunSQL for use in Research Requests
      Julia
      •
      Other
      •0•2•20•6•Updated Jan 2, 2026Jan 2, 2026

    • C2D2AI

      Public
      Resources for implementing the C2D2AI recruitment protocol
      HTML
      •1•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • Themis

      Public
      Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data generation or quality c…
      Apache License 2.0
      •9•0•0•0•Updated Dec 12, 2025Dec 12, 2025

    • CVB

      Public
      CVB, or Custom Vocabulary Builder, is designed to interface with SSSOM-based mappings hosted in GoogleSheets together with self-hosted runners in the Tufts Azur…
      JavaScript
      •
      Apache License 2.0
      •3•10•6•0•Updated Dec 8, 2025Dec 8, 2025

    • gaiaCore

      Public
      Central component of the OHDSI GIS Gaia toolchain
      Java
      •
      Apache License 2.0
      •1•1•0•0•Updated Nov 14, 2025Nov 14, 2025

    • VanguardOncologyNetworkTEMP

      Public
      Temporary space for development, documentation, and status tracking related to the Vanguard Oncology Network
      MIT License
      •0•1•11•0•Updated Apr 11, 2025Apr 11, 2025

    • Broadsea-GISland

      Public
      Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
      R
      •
      Apache License 2.0
      •71•0•0•0•Updated Oct 13, 2024Oct 13, 2024

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •128•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • TRDW-Guides

      Public
      Notebook Guides to OMOP-shaped TRDW
      Julia
      •
      Apache License 2.0
      •0•0•2•0•Updated Sep 6, 2024Sep 6, 2024

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      JavaScript
      •
      Apache License 2.0
      •106•0•0•0•Updated Mar 14, 2024Mar 14, 2024

    • TRDW-Handbook

      Public
      This is customer-facing documentation for the Informatics team at Tufts CTSI.
      Makefile
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • N3C-CodeSets

      Public
      A mirror of the N3C code set repository
      Python
      •0•1•0•0•Updated Mar 12, 2024Mar 12, 2024

    • csv2xlsx

      Public archive
      Trivial command line program to produce password protected xlsx file using Apache POI
      Java
      •
      MIT License
      •0•0•0•0•Updated Mar 2, 2024Mar 2, 2024

    • jupyter-pluto-proxy

      Public
      Jupyter Notebook with Pluto using jupyter-server-proxy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•0•0•0•Updated Nov 24, 2023Nov 24, 2023

    • OHNLPBackbone

      Public
      Provides backbone infrastructure elements for OHNLP toolsets.
      Java
      •
      Apache License 2.0
      •8•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • ZipFile.jl

      Public
      Fork of ZipFile.jl so one could set deflate level
      Julia
      •
      Other
      •45•0•0•0•Updated Oct 18, 2023Oct 18, 2023

    • OHNLPMedTagger

      Public
      MedTagger is a light weight clinical NLP system built upon Apache UIMA.
      Java
      •
      Apache License 2.0
      •20•1•0•0•Updated Oct 9, 2023Oct 9, 2023

    • N3C

      Public
      Tufts Medicine's Participation in the National Covid Cohort Collaborative
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•1•1•Updated Aug 15, 2023Aug 15, 2023

    • AresIndexer

      Public
      R package that creates the index and relevant files for an Ares deployment.
      R
      •
      Apache License 2.0
      •6•0•0•0•Updated May 11, 2023May 11, 2023

    • OHDSI-WorkPackage-Repository

      Public
      Provide a clearinghouse for connecting work needs with qualified and interested contributors in the OHDSI community
      Apache License 2.0
      •0•0•9•0•Updated May 8, 2023May 8, 2023

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      R
      •53•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • MIMIC2OMOP

      Public
      MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care uni…
      Python
      •
      Apache License 2.0
      •36•0•0•0•Updated Apr 26, 2023Apr 26, 2023

    • stcm

      Public
      Source_to_concept_map table
      0•0•0•0•Updated Apr 7, 2023Apr 7, 2023

    • PublicTest

      Public
      0•0•0•0•Updated Mar 30, 2023Mar 30, 2023