Repositories list

• RforUU

  Public
  Quarto website for teaching data science in R

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 28, 2025Dec 28, 2025

• msl_api

  Public
  PHP

  •1•0•0•7•Updated Dec 24, 2025Dec 24, 2025

• yoda-zabbix

  Public
  Zabbix files for Yoda: https://github.com/UtrechtUniversity/yoda

  zabbixyodazabbix-agentd

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Dec 24, 2025Dec 24, 2025

• doy-data-handbook

  Public
  HTML

  •1•0•2•0•Updated Dec 23, 2025Dec 23, 2025

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •25•54•59•4•Updated Dec 23, 2025Dec 23, 2025

• FSW-Openshift

  Public
  CSS

  •0•0•0•4•Updated Dec 23, 2025Dec 23, 2025

• doy-data-inventory

  Public
  HTML

  •

  Other

  •0•0•5•0•Updated Dec 22, 2025Dec 22, 2025

• matomo-ansible

  Public
  Ansible playbook and Docker Compose setup for Matomo web statistics

  Shell

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•2•Updated Dec 19, 2025Dec 19, 2025

• exposome-maps

  Public
  JavaScript

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•2•Updated Dec 19, 2025Dec 19, 2025

• ecobuild

  Public
  A website for the EcoBuild project, built using Astro.

  Astro

  •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

• ivt-pipeline-icon-arctic

  Public
  Shell

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• ivt-pipeline-racmo-arctic

  Public
  Shell

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• vre-docs

  Public
  User documentation for Research Cloud tailored at UU researchers

  Lua

  •

  MIT License

  •2•1•18•0•Updated Dec 18, 2025Dec 18, 2025

• insects

  Public
  Jupyter Notebook

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •6•1•0•1•Updated Dec 18, 2025Dec 18, 2025

• campylobacter-crisprscape

  Public
  Exploring the diversity of CRISPR spacers in Campylobacter jejuni & coli

  bioinformaticssnakemakecampylobacter+ 2crispr-cas-systemsbacterial-genomics

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•14•0•Updated Dec 17, 2025Dec 17, 2025

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 15graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 8

  Python

  •

  MIT License

  •5•29•0•0•Updated Dec 17, 2025Dec 17, 2025

• research-engineering

  Public
  UU Research Engineering team

  CSS

  •

  Apache License 2.0

  •0•6•0•1•Updated Dec 17, 2025Dec 17, 2025

• mass_coordination_game

  Public
  oTree code for a network experiment

  HTML

  •

  MIT License

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• re-presentation-udcc-vre

  Public
  Presentation for the UDCC Forum December 2025 on VREs.

  SCSS

  •

  Apache License 2.0

  •0•0•1•0•Updated Dec 16, 2025Dec 16, 2025

• hpc-spring-school

  Public
  Website 2026 HPC Spring School @ UU

  github-pageswebsiteworkshop+ 2hpcquarto

  HTML

  •

  MIT License

  •0•0•0•0•Updated Dec 16, 2025Dec 16, 2025

• workshop-introduction-to-R-and-data

  Public
  Material for the workshop 'Introduction to R & data'

  HTML

  •

  Creative Commons Attribution 4.0 International

  •14•34•8•0•Updated Dec 15, 2025Dec 15, 2025

• researchcloud-items

  Public
  Installation scripts for SURF ResearchCloud catalog components

  ansible-roleresearch-cloud

  Jinja

  •

  GNU General Public License v3.0

  •4•9•30•7•Updated Dec 15, 2025Dec 15, 2025

• SRC-molecule

  Public
  A set of molecule configuration files to faciliate testing of SURF Research Cloud items.

  0•0•3•0•Updated Dec 15, 2025Dec 15, 2025

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Jinja

  •

  GNU General Public License v3.0

  •1•7•0•0•Updated Dec 12, 2025Dec 12, 2025

• cd2-ansible

  Public
  Ansible scripts for the deployment of the CD² metadata catalogue

  Jinja

  •

  GNU Affero General Public License v3.0

  •1•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• numworx-gwt-stream

  Public
  stream widget

  Elm

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• MEGAISurv-Namaste

  Public
  Nanopore Metagenomic Antibiotic Resistance and Taxonomy Screening

  snakemakemetagenomicsantibiotic-resistance+ 2taxonomic-classificationnanopore-sequencing

  R

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•14•0•Updated Dec 11, 2025Dec 11, 2025