Repositories list

• flask-examples

  Public
  Example applications for Flask learners.

  JavaScript

  •

  MIT License

  •159•0•0•3•Updated Feb 20, 2026Feb 20, 2026

• yoda-portal

  Public
  Web portal for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonflaskyoda+ 1irods

  JavaScript

  •

  GNU General Public License v3.0

  •13•10•0•1•Updated Feb 20, 2026Feb 20, 2026

• ricgraph

  Public
  Ricgraph - Research in context graph

  visualizationmetadataenrichment+ 15graphlinked-dataharvestknowledge-graphharvest-datagraph-databaseharvester+ 8

  Python

  •

  MIT License

  •6•30•0•0•Updated Feb 20, 2026Feb 20, 2026

• ecobuild

  Public
  A website for the EcoBuild project, built using Astro.

  Astro

  •0•1•0•3•Updated Feb 20, 2026Feb 20, 2026

• cd2-ansible

  Public
  Ansible scripts for the deployment of the CD² metadata catalogue

  Jinja

  •

  GNU Affero General Public License v3.0

  •1•0•0•1•Updated Feb 20, 2026Feb 20, 2026

• epos-msl

  Public
  EPOS Multi-scale laboratories CKAN deployment

  redisansiblesolr+ 4postgresqlckanapache2epos

  Jinja

  •

  GNU General Public License v3.0

  •1•7•0•2•Updated Feb 20, 2026Feb 20, 2026

• MEGAISurv-Namaste

  Public
  Nanopore Metagenomic Antibiotic Resistance and Taxonomy Screening

  snakemakemetagenomicsantibiotic-resistance+ 2taxonomic-classificationnanopore-sequencing

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•12•0•Updated Feb 20, 2026Feb 20, 2026

• PyRUU

  Public
  Quarto website for teaching data science in R and Python

  JavaScript

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 20, 2026Feb 20, 2026

• vre-docs

  Public
  User documentation for Research Cloud tailored at UU researchers

  Lua

  •

  MIT License

  •2•2•16•3•Updated Feb 19, 2026Feb 19, 2026

• mass_coordination_game

  Public
  oTree code for a network experiment

  HTML

  •

  MIT License

  •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• msl_api

  Public
  PHP

  •1•0•0•12•Updated Feb 19, 2026Feb 19, 2026

• yoda-ruleset

  Public
  iRODS ruleset and policies for Yoda: https://github.com/UtrechtUniversity/yoda

  pythonyodairods

  Python

  •

  GNU General Public License v3.0

  •13•9•0•2•Updated Feb 19, 2026Feb 19, 2026

• exposome-maps

  Public
  HTML

  •0•0•0•0•Updated Feb 19, 2026Feb 19, 2026

• MITAR

  Public
  Repository containing dynamical models for the MITAR project

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Feb 19, 2026Feb 19, 2026

• yoda

  Public
  A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.

  ansibledataresearch+ 4yodairodsautomated-deploymentutrecht-university

  HTML

  •

  GNU General Public License v3.0

  •25•54•60•2•Updated Feb 19, 2026Feb 19, 2026

• Exposome-Map-Documents

  Public
  HTML

  •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• icat-database-checker

  Public
  script to check the iRODS ICAT database for inconsistencies and unusual situations

  irods

  Python

  •

  MIT License

  •1•0•0•0•Updated Feb 18, 2026Feb 18, 2026

• PoC-Asbestos

  Public
  Code and documentation for the calculation of a cut-off asbestos exposure value for the one-time compensation of workers who develop lung cancer as a result of …

  workerlung-cancermeta-analysis+ 7causalitysmokingcompensationipdoccupationalasbestoscarcinogen

  R

  •

  MIT License

  •0•1•0•0•Updated Feb 18, 2026Feb 18, 2026

• sol

  Public
  HTML

  •2•0•3•0•Updated Feb 17, 2026Feb 17, 2026

• luister

  Public
  R

  •

  MIT License

  •0•0•1•0•Updated Feb 17, 2026Feb 17, 2026

• irods-uu-microservices

  Public
  Miscellaneous iRODS microservices developed or modified by Utrecht University.

  yodairods

  C++

  •

  GNU Lesser General Public License v3.0

  •3•2•0•0•Updated Feb 17, 2026Feb 17, 2026

• matomo-ansible

  Public
  Ansible playbook and Docker Compose setup for Matomo web statistics

  Shell

  •

  MIT License

  •0•0•0•0•Updated Feb 16, 2026Feb 16, 2026

• visibility-check

  Public
  A tool for checking and extend the online presence of your publications

  PHP

  •0•0•0•14•Updated Feb 14, 2026Feb 14, 2026

• yoda-zabbix

  Public
  Zabbix files for Yoda: https://github.com/UtrechtUniversity/yoda

  zabbixyodazabbix-agentd

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Feb 13, 2026Feb 13, 2026

• containerplatform-docs

  Public
  Container Platform public documentation

  Dockerfile

  •6•1•0•0•Updated Feb 12, 2026Feb 12, 2026

• press_pure

  Public
  import media items from lexis nexis newsdesk to pure

  Python

  •

  MIT License

  •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

• Paleobiology-Evolution

  Public
  Part of the BSc in Geosciences programme at UU: course materials

  diversitybiologyevolution+ 9teachingmorphometricsecologypaleobiologyphylogenypaleontologyechinoderms+ 2

  CSS

  •

  Other

  •0•0•0•1•Updated Feb 12, 2026Feb 12, 2026

• src-python-example

  Public
  Exercise for setting up Python environments on Surf Research Cloud

  Jupyter Notebook

  •

  MIT License

  •2•0•0•1•Updated Feb 11, 2026Feb 11, 2026

• wildlifenl

  Public
  Back-end API for the WildlifeNL project.

  Go

  •

  Mozilla Public License 2.0

  •0•2•12•0•Updated Feb 11, 2026Feb 11, 2026

• EXPANSE-mapping-tools

  Public
  A place for scripts used in the preparation of data and configuration of the ETAIN

  Python

  •0•0•0•0•Updated Feb 11, 2026Feb 11, 2026