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    351 repositories

    • study-dealer-nextflow

      Public
      Deals studies to the wrangler
      Apache License 2.0
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • ngs-samples-nextflow

      Public
      Fetch ngs samples from SRA if needed and/or prepare samplesheet for further processing
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 13, 2025Jun 13, 2025

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•3•0•4•Updated Jun 13, 2025Jun 13, 2025

    • WDK

      Public
      Java
      •
      Apache License 2.0
      •4•1•10•8•Updated Jun 13, 2025Jun 13, 2025

    • ApiCommonModel

      Public
      Perl
      •
      Apache License 2.0
      •0•1•0•11•Updated Jun 13, 2025Jun 13, 2025

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Jun 13, 2025Jun 13, 2025

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•4•Updated Jun 13, 2025Jun 13, 2025

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•4•5•Updated Jun 13, 2025Jun 13, 2025

    • array-probes-nextflow

      Public
      Map Expression and Genomic (chipchip/cgh) array probes to a genome
      Perl
      •
      Apache License 2.0
      •0•0•0•1•Updated Jun 13, 2025Jun 13, 2025

    • vdi-service

      Public
      VEuPathDB Dataset Installer
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•41•0•Updated Jun 13, 2025Jun 13, 2025

    • busco-nextflow

      Public
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • signalp-nextflow

      Public
      Nextflow
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•3•205•27•Updated Jun 12, 2025Jun 12, 2025

    • vdi-component-common

      Public archive
      Common components for VDI projects
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•0•1•Updated Jun 12, 2025Jun 12, 2025

    • orthoFinder-nextflow

      Public
      orthoFinder Nextflow workflow
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • vdi-plugin-biom

      Public
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Jun 11, 2025Jun 11, 2025

    • vdi-plugin-isasimple

      Public
      Perl
      •
      Apache License 2.0
      •0•0•2•0•Updated Jun 11, 2025Jun 11, 2025

    • docker-gus-apidb-base

      Public
      Docker image definition for an image that contains the GUS model objects and the ApiDB schema loaded in postgres.
      javadockerperlpostgresqlgusapidb
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bowtie-mapping-nextflow

      Public
      Nextflow conversion of BowtieMappingTask
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • TestDatasets

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •2•1•2•4•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-rnaseq

      Public
      Perl
      •
      Apache License 2.0
      •0•0•1•0•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-genelist

      Public
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-wrangler

      Public
      General purpose VDI plugin to process files for EDA loading using the study-wrangler
      R
      •
      Apache License 2.0
      •0•0•3•0•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-noop

      Public
      Empty VDI plugin which performs no import or install processing of data.
      Makefile
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-example

      Public template
      VDI handler plugin example repository.
      vdi
      Shell
      •
      Apache License 2.0
      •0•0•1•0•Updated Jun 10, 2025Jun 10, 2025

    • vdi-plugin-bigwig

      Public
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 10, 2025Jun 10, 2025

    • lib-jackson-singleton

      Public
      Preconfigured Jackson & Utils
      jsonlibraryjackson
      Kotlin
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

    • vdi-plugin-handler-server

      Public archive
      VDI Service Plugin Handler Server
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 9, 2025Jun 9, 2025

    • websiteconf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 6, 2025Jun 6, 2025