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@VEuPathDB VEuPathDB Bioinformatics Resource Center

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    362 repositories

    • ApiCommonModel

      Public
      Perl
      •
      Apache License 2.0
      •0•1•0•13•Updated Feb 21, 2026Feb 21, 2026

    • EbrcModelCommon

      Public
      Java
      •
      Apache License 2.0
      •0•1•2•3•Updated Feb 20, 2026Feb 20, 2026

    • vdi-service

      Public
      VEuPathDB Dataset Installer
      vdi
      Kotlin
      •
      Apache License 2.0
      •0•0•28•5•Updated Feb 20, 2026Feb 20, 2026

    • service-sequence-retrieval

      Public
      REST service for sequence retrieval , reads subsequences from FASTA files using `htsjdk`
      Java
      •
      Apache License 2.0
      •0•0•5•1•Updated Feb 20, 2026Feb 20, 2026

    • puppet-ebrc_httpd_setup

      Public
      Puppet module to manage Apache HTTPD per EuPathDB specs
      Perl
      •0•0•0•0•Updated Feb 20, 2026Feb 20, 2026

    • dnaseq-nextflow

      Public
      DNASeq Alignments with SNP and CNV nextflow workflow
      Perl
      •
      Apache License 2.0
      •1•1•2•2•Updated Feb 20, 2026Feb 20, 2026

    • TuningManager

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•1•Updated Feb 20, 2026Feb 20, 2026

    • service-eda

      Public
      Repo containing EDA web service
      Java
      •
      Apache License 2.0
      •0•0•25•2•Updated Feb 20, 2026Feb 20, 2026

    • StaticContent

      Public
      HTML
      •
      Apache License 2.0
      •6•0•0•4•Updated Feb 20, 2026Feb 20, 2026

    • web-monorepo

      Public
      A monorepo that contains all frontend code for VEuPathDB websites
      TypeScript
      •
      Apache License 2.0
      •0•3•257•31•Updated Feb 20, 2026Feb 20, 2026

    • WDK

      Public
      Java
      •
      Apache License 2.0
      •4•1•13•7•Updated Feb 20, 2026Feb 20, 2026

    • ApiCommonWebsite

      Public
      Perl
      •
      Apache License 2.0
      •1•3•4•9•Updated Feb 19, 2026Feb 19, 2026

    • OrthoMCLModel

      Public
      Java
      •
      Apache License 2.0
      •0•0•0•1•Updated Feb 19, 2026Feb 19, 2026

    • psipred-nextflow

      Public
      Nextflow Workflow for moving away from DJOB
      Nextflow
      •
      Apache License 2.0
      •1•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • lib-jaxrs-container-core

      Public
      Core library for VEuPathDB JaxRS container services
      librarycontainersjaxrs
      Java
      •
      Apache License 2.0
      •0•0•11•1•Updated Feb 19, 2026Feb 19, 2026

    • jenkins-website-job-generator

      Public
      Generate Jenkins job configurations for EuPathDB core sites using the job-dsl plugin
      Groovy
      •
      Apache License 2.0
      •0•1•1•0•Updated Feb 19, 2026Feb 19, 2026

    • EbrcWebsiteCommon

      Public
      Perl
      •
      Apache License 2.0
      •3•3•10•5•Updated Feb 19, 2026Feb 19, 2026

    • ApiCommonData

      Public
      Perl
      •
      Apache License 2.0
      •3•3•0•1•Updated Feb 19, 2026Feb 19, 2026

    • SiteSearchData

      Public
      WDK Model and other code needed to run a WDK and generate reports to make JSON files to index in solr
      Python
      •
      Apache License 2.0
      •0•1•10•2•Updated Feb 19, 2026Feb 19, 2026

    • websiteconf

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

    • ApiCommonWebService

      Public
      Java
      •
      Apache License 2.0
      •1•0•1•0•Updated Feb 18, 2026Feb 18, 2026

    • GusAppFramework

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•1•Updated Feb 18, 2026Feb 18, 2026

    • install

      Public
      Shell
      •
      Apache License 2.0
      •2•0•1•21•Updated Feb 18, 2026Feb 18, 2026

    • ApiCommonWorkflow

      Public
      Perl
      •
      Apache License 2.0
      •1•0•0•2•Updated Feb 17, 2026Feb 17, 2026

    • lib-compute-platform

      Public
      Async compute platform core.
      libraryasyncasynchronouslibjob-queuecompute
      Kotlin
      •0•1•6•0•Updated Feb 17, 2026Feb 17, 2026

    • Rserve

      Public
      Dockerfile
      •0•0•10•1•Updated Feb 17, 2026Feb 17, 2026

    • plot.data

      Public
      R
      •0•1•56•0•Updated Feb 17, 2026Feb 17, 2026

    • veupathUtils

      Public
      A collection of general purpose R helper functions for use in the VEuPathDB project.
      R
      •
      Apache License 2.0
      •1•0•15•0•Updated Feb 17, 2026Feb 17, 2026

    • lib-jersey-multipart-jackson-pojo

      Public
      Provides a Jersey MessageBodyReader that converts multipart/form-data requests to POJOs using Jackson.
      Kotlin
      •
      Apache License 2.0
      •0•0•9•0•Updated Feb 16, 2026Feb 16, 2026

    • service-multi-blast

      Public
      Async BLAST+ query service and supporting libraries.
      libraryqueryservicefastablastncbincbi-blast
      Kotlin
      •
      Apache License 2.0
      •0•0•19•0•Updated Feb 16, 2026Feb 16, 2026