Repositories list

• H3DSG

  Public
  code for the H3-altered Diffuse Spinal cord Glioma project

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• BRCA-pCR

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

• MOPCR

  Public
  1•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• CRLM

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 27, 2024Oct 27, 2024

• CELLO2-analysis

  Public
  Analysis and figure code from Mu et al.

  R

  •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

• TMZscript

  Public
  Jupyter Notebook

  •2•0•0•0•Updated Feb 8, 2023Feb 8, 2023

• METANET-analysis

  Public
  Analysis and figure code from Jiang et al.

  MATLAB

  •

  GNU General Public License v3.0

  •4•3•0•0•Updated Feb 20, 2022Feb 20, 2022

• denovoSAVI

  Public
  Python

  •0•1•0•0•Updated Aug 19, 2021Aug 19, 2021

• LEMONADE

  Public
  LEMONADE: Low-frEquency soMatic mutatiON cAlling using Deep sEquencing

  MATLAB

  •0•0•0•0•Updated Aug 18, 2021Aug 18, 2021

• CELLO

  Public
  [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data

  genomicscancerevolution

  MATLAB

  •7•16•0•0•Updated Aug 24, 2020Aug 24, 2020

• ntcirseq

  Public
  [source] In-house python script for detecting non-tandem repeats in cir-seq data

  genomics

  Python

  •1•1•0•0•Updated Jul 6, 2020Jul 6, 2020

• xgboost_tutorial

  Public
  A tutorial on xgboost

  R

  •0•0•0•0•Updated May 11, 2020May 11, 2020

• FLORA

  Public
  [source] Functional Long-noncoding RNA Assembly Workflow

  Python

  •

  MIT License

  •3•4•0•0•Updated Jan 21, 2020Jan 21, 2020

• CNAPE

  Public
  [Source] CNAPE: A Software for Copy Number Alteration Prediction from Gene Expression in Human Cancers

  R

  •5•6•1•0•Updated Jun 18, 2019Jun 18, 2019

• wsi-pro

  Public
  [source] wsi image processing workflow

  MIT License

  •0•3•0•0•Updated Sep 26, 2018Sep 26, 2018

• SAVI

  Public
  [forked] SAVI - statistical algorithm for variant identification

  C++

  •5•5•0•0•Updated Sep 22, 2018Sep 22, 2018